Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS33755

Experiment: R2A with D-Cycloserine 0.5 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with D-Cycloserine 0.5 mg/ml
3,000,053	+		RR42_RS33750	0.27	+0.2
3,000,054	-		RR42_RS33750	0.27	+0.4
3,000,127	+		RR42_RS33750	0.35	-0.7
3,000,127	+		RR42_RS33750	0.35	-0.5
3,000,127	+		RR42_RS33750	0.35	+1.1
3,000,128	-		RR42_RS33750	0.35	-0.6
3,000,128	-		RR42_RS33750	0.35	-0.1
3,000,128	-		RR42_RS33750	0.35	-0.9
3,000,128	-		RR42_RS33750	0.35	+0.3
3,000,212	-		RR42_RS33750	0.43	-0.3
3,000,212	-		RR42_RS33750	0.43	-0.2
3,000,243	+		RR42_RS33750	0.46	-0.4
3,000,243	+		RR42_RS33750	0.46	-0.8
3,000,298	+		RR42_RS33750	0.52	+0.6
3,000,299	-		RR42_RS33750	0.52	+1.2
3,000,299	-		RR42_RS33750	0.52	-0.0
3,000,328	+		RR42_RS33750	0.55	-0.4
3,000,436	+		RR42_RS33750	0.66	+0.7
3,000,436	+		RR42_RS33750	0.66	+0.7
3,000,437	-		RR42_RS33750	0.66	-0.5
3,000,437	-		RR42_RS33750	0.66	-0.7
3,000,500	-		RR42_RS33750	0.73	-1.1
3,000,683	-				+0.6
3,000,842	-				-1.7
3,001,362	+		RR42_RS33755	0.44	-1.6
3,001,363	-		RR42_RS33755	0.44	-0.7
3,001,564	-		RR42_RS33755	0.62	+0.4
3,001,658	+		RR42_RS33755	0.71	-1.1
3,001,658	+		RR42_RS33755	0.71	-0.9
3,001,659	-		RR42_RS33755	0.71	+0.5
3,001,803	+		RR42_RS33755	0.84	-0.7
3,001,803	+		RR42_RS33755	0.84	-0.1
3,001,804	-		RR42_RS33755	0.85	-0.2
3,001,804	-		RR42_RS33755	0.85	-2.3
3,001,806	+		RR42_RS33755	0.85	-0.7
3,001,807	-		RR42_RS33755	0.85	+0.7
3,001,807	-		RR42_RS33755	0.85	-2.5
3,001,821	+		RR42_RS33755	0.86	+0.4
3,001,821	+		RR42_RS33755	0.86	+0.8
3,001,821	+		RR42_RS33755	0.86	-1.4
3,001,822	-		RR42_RS33755	0.86	-3.2
3,001,824	+		RR42_RS33755	0.86	+1.7
3,001,825	-		RR42_RS33755	0.87	+0.2
3,001,959	+				-1.4
3,001,960	-				-3.8
3,001,960	-				-3.5
3,001,960	-				+0.5
3,002,025	+				-1.1
3,002,098	+				-0.0
3,002,309	+		RR42_RS33760	0.22	+0.7
3,002,310	-				+1.5
3,002,432	+		RR42_RS33760	0.36	-0.6
3,002,433	-		RR42_RS33760	0.36	+1.1
3,002,539	-		RR42_RS33760	0.48	-0.5
3,002,628	-		RR42_RS33760	0.58	-1.8
3,002,760	+		RR42_RS33760	0.73	-0.6
3,002,761	-		RR42_RS33760	0.73	-1.4
3,002,897	+		RR42_RS33760	0.88	+0.8
3,002,897	+		RR42_RS33760	0.88	+0.9
3,002,898	-		RR42_RS33760	0.88	+1.6
3,002,898	-		RR42_RS33760	0.88	+0.3
3,002,919	+				+0.6