Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS31360

Experiment: R2A with D-Cycloserine 0.5 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with D-Cycloserine 0.5 mg/ml
2,409,159	-				-1.8
2,409,351	+		RR42_RS31355	0.24	-0.3
2,409,531	+		RR42_RS31355	0.47	+1.2
2,409,541	+		RR42_RS31355	0.49	-1.4
2,409,541	+		RR42_RS31355	0.49	-0.1
2,409,542	-		RR42_RS31355	0.49	+0.2
2,409,631	-		RR42_RS31355	0.60	+1.1
2,410,019	+				-0.5
2,410,019	+				+0.5
2,410,019	+				+0.8
2,410,019	+				-3.2
2,410,019	+				+0.7
2,410,019	+				+1.0
2,410,020	-				-2.3
2,410,020	-				+0.4
2,410,020	-				+0.0
2,410,038	+				+0.4
2,410,088	-				+1.5
2,410,088	-				-0.2
2,410,154	-				+0.8
2,410,154	-				-0.1
2,410,159	+				+0.4
2,410,160	-				+0.5
2,410,160	-				+0.0
2,410,289	+		RR42_RS31360	0.11	-2.5
2,410,289	+		RR42_RS31360	0.11	+0.1
2,410,289	+		RR42_RS31360	0.11	+0.2
2,410,289	+		RR42_RS31360	0.11	-2.3
2,410,289	+		RR42_RS31360	0.11	-0.5
2,410,290	-		RR42_RS31360	0.11	-0.9
2,410,300	+		RR42_RS31360	0.11	-0.8
2,410,360	+		RR42_RS31360	0.14	+1.4
2,410,360	+		RR42_RS31360	0.14	-3.8
2,410,360	+		RR42_RS31360	0.14	+0.7
2,410,389	-		RR42_RS31360	0.16	+0.8
2,410,389	-		RR42_RS31360	0.16	-0.3
2,410,649	-		RR42_RS31360	0.28	-0.8
2,410,649	-		RR42_RS31360	0.28	-0.1
2,410,994	-		RR42_RS31360	0.44	-0.7
2,410,994	-		RR42_RS31360	0.44	+1.4
2,411,035	+		RR42_RS31360	0.46	-0.3
2,411,036	-		RR42_RS31360	0.46	+1.7
2,411,036	-		RR42_RS31360	0.46	-0.3
2,411,045	-		RR42_RS31360	0.46	+0.4
2,411,048	+		RR42_RS31360	0.47	-2.1
2,411,068	-		RR42_RS31360	0.48	-0.9
2,411,069	+		RR42_RS31360	0.48	-2.3
2,411,162	+		RR42_RS31360	0.52	-0.8
2,411,162	+		RR42_RS31360	0.52	+0.1
2,411,309	-		RR42_RS31360	0.59	-0.6
2,411,876	-		RR42_RS31360	0.85	+0.4
2,411,876	-		RR42_RS31360	0.85	-1.2
2,412,082	+				-1.0
2,412,082	+				+0.5
2,412,295	-				-0.9
2,412,390	+				-0.3
2,412,444	+		RR42_RS31365	0.10	+1.2
2,412,467	+		RR42_RS31365	0.12	+0.2
2,412,516	-		RR42_RS31365	0.16	-0.4
2,412,525	+		RR42_RS31365	0.17	-3.5
2,412,525	+		RR42_RS31365	0.17	+0.2
2,412,525	+		RR42_RS31365	0.17	-1.0
2,412,768	-		RR42_RS31365	0.37	-0.6
2,412,768	-		RR42_RS31365	0.37	-0.1
2,412,872	+		RR42_RS31365	0.45	-0.3
2,412,872	+		RR42_RS31365	0.45	-0.4
2,413,123	+		RR42_RS31365	0.66	-0.3
2,413,124	-		RR42_RS31365	0.66	+0.0
2,413,184	+		RR42_RS31365	0.71	-3.0
2,413,184	+		RR42_RS31365	0.71	+0.4
2,413,185	-		RR42_RS31365	0.71	-2.1
2,413,185	-		RR42_RS31365	0.71	-0.1
2,413,185	-		RR42_RS31365	0.71	-0.9
2,413,185	-		RR42_RS31365	0.71	+0.1
2,413,185	-		RR42_RS31365	0.71	+1.0