Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS31110

Experiment: R2A with D-Cycloserine 0.5 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with D-Cycloserine 0.5 mg/ml
2,358,523	+		RR42_RS31105	0.16	-0.2
2,358,523	+		RR42_RS31105	0.16	+0.2
2,358,533	+		RR42_RS31105	0.17	-0.4
2,358,569	-		RR42_RS31105	0.20	-0.6
2,358,596	+		RR42_RS31105	0.23	-0.7
2,358,597	-		RR42_RS31105	0.23	-2.5
2,358,597	-		RR42_RS31105	0.23	+0.7
2,358,695	-		RR42_RS31105	0.31	-0.3
2,358,784	+		RR42_RS31105	0.39	+0.5
2,358,784	+		RR42_RS31105	0.39	+0.4
2,358,784	+		RR42_RS31105	0.39	+2.5
2,358,784	+		RR42_RS31105	0.39	-1.1
2,358,785	-		RR42_RS31105	0.39	+0.0
2,358,846	-		RR42_RS31105	0.44	-0.5
2,358,928	+		RR42_RS31105	0.51	-1.3
2,358,929	-		RR42_RS31105	0.51	-0.8
2,358,929	-		RR42_RS31105	0.51	-0.6
2,358,929	-		RR42_RS31105	0.51	+0.9
2,359,232	+		RR42_RS31105	0.77	+0.8
2,359,232	+		RR42_RS31105	0.77	+1.1
2,359,233	-		RR42_RS31105	0.77	+0.7
2,359,233	-		RR42_RS31105	0.77	-0.5
2,359,233	-		RR42_RS31105	0.77	-0.5
2,359,233	-		RR42_RS31105	0.77	-2.9
2,359,233	-		RR42_RS31105	0.77	+0.6
2,359,233	-		RR42_RS31105	0.77	+0.3
2,359,233	-		RR42_RS31105	0.77	+0.3
2,359,327	+		RR42_RS31105	0.85	-3.0
2,359,328	-		RR42_RS31105	0.85	-2.6
2,359,328	-		RR42_RS31105	0.85	-1.2
2,359,424	-				+0.2
2,359,446	+				-1.5
2,359,446	+				-1.3
2,359,446	+				-0.8
2,359,446	+				-1.1
2,359,447	-				+0.2
2,359,506	+				-1.5
2,359,506	+				-1.3
2,359,506	+				+0.3
2,359,741	-		RR42_RS31110	0.24	+0.6
2,359,741	-		RR42_RS31110	0.24	-0.3
2,359,934	+		RR42_RS31110	0.43	-1.4
2,359,934	+		RR42_RS31110	0.43	-0.1
2,359,934	+		RR42_RS31110	0.43	-1.1
2,359,934	+		RR42_RS31110	0.43	-0.4
2,359,935	-		RR42_RS31110	0.44	-0.7
2,359,935	-		RR42_RS31110	0.44	-1.7
2,360,150	+		RR42_RS31110	0.66	-0.1
2,360,150	+		RR42_RS31110	0.66	-1.3
2,360,150	+		RR42_RS31110	0.66	-0.9
2,360,399	+				-1.3
2,360,530	+				+1.1
2,360,530	+				-0.7
2,360,530	+				-0.6
2,360,588	+				-0.4
2,360,609	+				+0.5
2,360,609	+				+0.1
2,360,610	-				+1.9
2,360,610	-				-0.0
2,360,610	-				-0.8
2,360,699	+		RR42_RS31115	0.11	+0.7
2,360,699	+		RR42_RS31115	0.11	+1.0
2,360,699	+		RR42_RS31115	0.11	-1.1
2,360,700	-		RR42_RS31115	0.12	-0.9
2,360,700	-		RR42_RS31115	0.12	+0.7
2,361,248	+		RR42_RS31115	0.68	-1.2
2,361,248	+		RR42_RS31115	0.68	-0.1
2,361,249	-		RR42_RS31115	0.68	+1.0
2,361,249	-		RR42_RS31115	0.68	+1.6
2,361,297	+		RR42_RS31115	0.73	+0.4
2,361,297	+		RR42_RS31115	0.73	-0.3
2,361,297	+		RR42_RS31115	0.73	-0.2
2,361,297	+		RR42_RS31115	0.73	+0.5
2,361,298	-		RR42_RS31115	0.73	+0.9
2,361,298	-		RR42_RS31115	0.73	+0.4
2,361,482	+				-0.9