Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS30520

Experiment: R2A with D-Cycloserine 0.5 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with D-Cycloserine 0.5 mg/ml
2,219,822	+		RR42_RS30510	0.80	-0.9
2,219,822	+		RR42_RS30510	0.80	-2.1
2,219,822	+		RR42_RS30510	0.80	-0.6
2,219,822	+		RR42_RS30510	0.80	+0.1
2,219,823	-		RR42_RS30510	0.80	-0.6
2,219,937	+				-0.3
2,219,938	-				+0.6
2,219,938	-				+0.3
2,219,939	+				-2.4
2,220,089	-		RR42_RS30515	0.14	-2.5
2,220,119	-		RR42_RS30515	0.18	+0.9
2,220,401	+		RR42_RS30515	0.59	+0.1
2,220,402	-		RR42_RS30515	0.59	-0.1
2,220,445	+		RR42_RS30515	0.65	-0.6
2,220,446	-		RR42_RS30515	0.65	+1.3
2,220,451	+		RR42_RS30515	0.66	-1.6
2,220,451	+		RR42_RS30515	0.66	+0.6
2,220,451	+		RR42_RS30515	0.66	+0.5
2,220,452	-		RR42_RS30515	0.66	-0.4
2,220,452	-		RR42_RS30515	0.66	-0.3
2,220,452	-		RR42_RS30515	0.66	-1.4
2,220,452	-		RR42_RS30515	0.66	-0.4
2,220,589	+		RR42_RS30515	0.86	-1.9
2,220,590	-		RR42_RS30515	0.86	-0.3
2,220,674	+				+0.5
2,220,738	+				+0.1
2,220,738	+				+0.2
2,220,738	+				-1.4
2,220,738	+				+0.4
2,220,738	+				-0.3
2,220,739	-				+0.8
2,220,739	-				-1.4
2,220,793	-				-1.1
2,220,811	+				+0.6
2,220,946	+		RR42_RS30520	0.18	-0.7
2,220,946	+		RR42_RS30520	0.18	-0.0
2,220,946	+		RR42_RS30520	0.18	+1.1
2,220,947	-		RR42_RS30520	0.18	-0.2
2,220,947	-		RR42_RS30520	0.18	-1.8
2,220,947	-		RR42_RS30520	0.18	+0.6
2,220,947	-		RR42_RS30520	0.18	-1.9
2,220,971	-		RR42_RS30520	0.21	+0.0
2,221,000	+		RR42_RS30520	0.23	+1.6
2,221,013	+		RR42_RS30520	0.25	-0.5
2,221,014	-		RR42_RS30520	0.25	+0.6
2,221,057	+		RR42_RS30520	0.29	-0.0
2,221,058	-		RR42_RS30520	0.29	-0.4
2,221,136	-		RR42_RS30520	0.36	-1.1
2,221,141	+		RR42_RS30520	0.37	+0.6
2,221,141	+		RR42_RS30520	0.37	-0.3
2,221,142	-		RR42_RS30520	0.37	-0.0
2,221,258	+		RR42_RS30520	0.48	-0.9
2,221,461	-		RR42_RS30520	0.67	-3.3
2,221,461	-		RR42_RS30520	0.67	+1.0
2,221,575	-		RR42_RS30520	0.78	+0.3
2,221,660	+		RR42_RS30520	0.86	-0.1
2,221,762	+				-0.4
2,221,762	+				+1.4
2,221,765	+				+1.0
2,221,765	+				-0.4
2,221,766	-				-1.3
2,221,766	-				-2.5
2,221,766	-				+0.3
2,221,877	+				+0.5
2,221,877	+				+1.9
2,221,878	-				+1.3
2,221,878	-				-0.8
2,221,879	+				-0.4
2,221,879	+				-0.7
2,221,893	+				+0.2
2,221,894	-				+0.0
2,221,932	-				-2.1
2,221,940	-				-1.1
2,222,007	+				-0.9
2,222,008	-				+0.4
2,222,464	+		RR42_RS30525	0.53	+1.6
2,222,464	+		RR42_RS30525	0.53	+1.5
2,222,465	-		RR42_RS30525	0.53	-0.4
2,222,465	-		RR42_RS30525	0.53	-0.7
2,222,465	-		RR42_RS30525	0.53	+0.3
2,222,465	-		RR42_RS30525	0.53	-0.1
2,222,465	-		RR42_RS30525	0.53	+0.4
2,222,465	-		RR42_RS30525	0.53	+0.5
2,222,549	-		RR42_RS30525	0.62	+1.3
2,222,549	-		RR42_RS30525	0.62	-0.0
2,222,691	+		RR42_RS30525	0.77	+0.7
2,222,691	+		RR42_RS30525	0.77	-2.9
2,222,692	-		RR42_RS30525	0.77	-1.9
2,222,692	-		RR42_RS30525	0.77	-0.9
2,222,692	-		RR42_RS30525	0.77	+0.4
2,222,703	-		RR42_RS30525	0.79	-0.9
2,222,794	+		RR42_RS30525	0.88	+1.6
2,222,794	+		RR42_RS30525	0.88	+0.6
2,222,795	-		RR42_RS30525	0.88	-0.8