Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS29965

Experiment: R2A with D-Cycloserine 0.5 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with D-Cycloserine 0.5 mg/ml
2,088,370	+				-1.6
2,088,370	+				-2.4
2,088,383	+				-0.3
2,088,384	-				-1.7
2,088,384	-				+0.6
2,088,432	+				-0.3
2,088,432	+				-0.3
2,088,433	-				-3.3
2,088,533	-		RR42_RS29960	0.15	+0.6
2,088,541	+		RR42_RS29960	0.17	-0.4
2,088,541	+		RR42_RS29960	0.17	-1.4
2,088,542	-		RR42_RS29960	0.17	-0.2
2,088,542	-		RR42_RS29960	0.17	-1.4
2,088,649	+		RR42_RS29960	0.39	+1.3
2,088,650	-		RR42_RS29960	0.39	-0.2
2,088,677	+		RR42_RS29960	0.45	+1.8
2,088,677	+		RR42_RS29960	0.45	-0.5
2,088,677	+		RR42_RS29960	0.45	+0.6
2,088,677	+		RR42_RS29960	0.45	-0.8
2,088,677	+		RR42_RS29960	0.45	+0.2
2,088,678	-		RR42_RS29960	0.45	+0.3
2,088,678	-		RR42_RS29960	0.45	-0.1
2,088,686	+		RR42_RS29960	0.47	-1.0
2,088,687	-		RR42_RS29960	0.47	-0.2
2,088,687	-		RR42_RS29960	0.47	-2.2
2,088,687	-		RR42_RS29960	0.47	+0.1
2,088,829	+		RR42_RS29960	0.76	-1.4
2,088,830	-		RR42_RS29960	0.76	-2.0
2,088,866	+		RR42_RS29960	0.83	-0.0
2,089,007	+				-2.2
2,089,007	+				+1.9
2,089,077	+				+0.6
2,089,077	+				-0.9
2,089,077	+				-1.1
2,089,078	-				+0.0
2,089,078	-				-1.5
2,089,119	+				+1.2
2,089,119	+				+0.3
2,089,120	-				+0.7
2,089,120	-				-0.5
2,089,135	+				-0.2
2,089,136	-				+0.1
2,089,186	+				-1.2
2,089,187	-				+0.2
2,089,187	-				-0.2
2,089,238	+				-1.6
2,089,252	+				+0.7
2,089,252	+				+0.6
2,089,252	+				-1.1
2,089,252	+				+2.2
2,089,253	-				-0.1
2,089,262	+				-0.7
2,089,262	+				-0.7
2,089,262	+				+0.5
2,089,263	-				+1.3
2,089,352	+				+1.6
2,089,352	+				-0.2
2,089,352	+				-0.4
2,089,353	-				+0.6
2,089,374	+				-2.7
2,089,375	-				+0.3
2,089,498	+		RR42_RS29965	0.15	-0.9
2,089,498	+		RR42_RS29965	0.15	-0.4
2,089,556	-		RR42_RS29965	0.21	+0.2
2,089,586	+		RR42_RS29965	0.24	-0.3
2,089,587	-		RR42_RS29965	0.24	-2.0
2,089,684	+		RR42_RS29965	0.34	-0.6
2,089,684	+		RR42_RS29965	0.34	+0.7
2,089,727	-		RR42_RS29965	0.38	-0.7
2,089,727	-		RR42_RS29965	0.38	+0.6
2,089,727	-		RR42_RS29965	0.38	-1.4
2,089,859	+		RR42_RS29965	0.52	+0.8
2,090,014	-		RR42_RS29965	0.67	+0.0
2,090,034	+		RR42_RS29965	0.69	+0.2
2,090,034	+		RR42_RS29965	0.69	-0.3
2,090,034	+		RR42_RS29965	0.69	-0.4
2,090,034	+		RR42_RS29965	0.69	-0.4
2,090,043	+		RR42_RS29965	0.70	+0.9
2,090,043	+		RR42_RS29965	0.70	-0.1
2,090,043	+		RR42_RS29965	0.70	+0.0
2,090,044	-		RR42_RS29965	0.70	+0.9
2,090,052	+		RR42_RS29965	0.71	-0.8
2,090,052	+		RR42_RS29965	0.71	+2.2
2,090,063	+		RR42_RS29965	0.72	-2.9
2,090,063	+		RR42_RS29965	0.72	-2.9
2,090,063	+		RR42_RS29965	0.72	+0.8
2,090,063	+		RR42_RS29965	0.72	-0.6
2,090,063	+		RR42_RS29965	0.72	-0.4
2,090,064	-		RR42_RS29965	0.72	+2.1
2,090,090	+		RR42_RS29965	0.75	-1.1
2,090,090	+		RR42_RS29965	0.75	-0.4
2,090,090	+		RR42_RS29965	0.75	-0.7
2,090,090	+		RR42_RS29965	0.75	-0.1
2,090,091	-		RR42_RS29965	0.75	+0.5
2,090,091	-		RR42_RS29965	0.75	+1.3
2,090,091	-		RR42_RS29965	0.75	+0.8
2,090,091	-		RR42_RS29965	0.75	-1.0
2,090,178	+		RR42_RS29965	0.84	-1.4
2,090,178	+		RR42_RS29965	0.84	-2.2
2,090,178	+		RR42_RS29965	0.84	-0.0
2,090,179	-		RR42_RS29965	0.84	-0.3
2,090,311	-				-0.3
2,090,321	-				-0.3
2,090,437	+				-1.7
2,090,437	+				-0.6
2,090,437	+				-1.3
2,090,437	+				-1.4
2,090,438	-				+1.1
2,090,438	-				+0.6
2,090,438	-				+0.7
2,090,438	-				+0.1
2,090,438	-				-1.4
2,090,438	-				-0.1
2,090,438	-				-0.3
2,090,440	+				-1.7
2,090,440	+				+0.6
2,090,440	+				+1.0
2,090,440	+				-0.3
2,090,440	+				-1.9
2,090,440	+				-1.8
2,090,440	+				-0.6
2,090,440	+				-3.0
2,090,440	+				+0.3
2,090,440	+				+1.0
2,090,441	-				+1.1
2,090,441	-				-2.4
2,090,441	-				+1.0
2,090,441	-				+0.7
2,090,441	-				-1.0
2,090,441	-				+0.3
2,090,441	-				+1.6
2,090,441	-				+0.3
2,090,497	+		RR42_RS29970	0.10	+0.8
2,090,497	+		RR42_RS29970	0.10	-3.0
2,090,497	+		RR42_RS29970	0.10	-3.5
2,090,497	+		RR42_RS29970	0.10	+0.6
2,090,497	+		RR42_RS29970	0.10	+0.2
2,090,497	+		RR42_RS29970	0.10	+0.8
2,090,497	+		RR42_RS29970	0.10	-0.6
2,090,497	+		RR42_RS29970	0.10	-1.2
2,090,497	+		RR42_RS29970	0.10	-0.4
2,090,497	+		RR42_RS29970	0.10	-1.4
2,090,497	+		RR42_RS29970	0.10	-1.8
2,090,497	+		RR42_RS29970	0.10	-0.3
2,090,498	-		RR42_RS29970	0.11	-2.0
2,090,523	+		RR42_RS29970	0.15	-1.6
2,090,523	+		RR42_RS29970	0.15	+0.3
2,090,523	+		RR42_RS29970	0.15	-1.1
2,090,556	+		RR42_RS29970	0.20	+1.4
2,090,579	+		RR42_RS29970	0.23	-1.2
2,090,579	+		RR42_RS29970	0.23	-0.5
2,090,706	-		RR42_RS29970	0.43	+0.6
2,090,755	+		RR42_RS29970	0.50	-0.2
2,090,837	-		RR42_RS29970	0.63	-2.2
2,090,837	-		RR42_RS29970	0.63	-0.4
2,091,211	+				-0.3
2,091,212	-				-0.4
2,091,212	-				+0.7
2,091,301	+				-0.1
2,091,301	+				-1.0
2,091,301	+				+0.3
2,091,302	-				-0.4
2,091,302	-				-0.6
2,091,302	-				+1.0
2,091,302	-				-0.2
2,091,327	+				-2.0
2,091,333	-				-0.9
2,091,333	-				-1.7