Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS29955

Experiment: R2A with D-Cycloserine 0.5 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with D-Cycloserine 0.5 mg/ml
2,086,042	-		RR42_RS29950	0.22	+0.1
2,086,042	-		RR42_RS29950	0.22	+0.4
2,086,042	-		RR42_RS29950	0.22	+1.8
2,086,047	+		RR42_RS29950	0.23	+0.5
2,086,047	+		RR42_RS29950	0.23	-2.9
2,086,173	-		RR42_RS29950	0.33	-1.9
2,086,255	+		RR42_RS29950	0.39	+0.3
2,086,255	+		RR42_RS29950	0.39	+0.2
2,086,256	-		RR42_RS29950	0.39	+0.8
2,086,256	-		RR42_RS29950	0.39	+1.1
2,086,263	+		RR42_RS29950	0.40	+0.2
2,086,264	-		RR42_RS29950	0.40	-2.0
2,086,289	+		RR42_RS29950	0.42	-0.5
2,086,469	+		RR42_RS29950	0.56	-1.6
2,086,469	+		RR42_RS29950	0.56	-0.1
2,086,469	+		RR42_RS29950	0.56	+1.5
2,086,470	-		RR42_RS29950	0.56	-1.9
2,086,470	-		RR42_RS29950	0.56	+0.4
2,086,549	+		RR42_RS29950	0.62	-0.3
2,086,589	+		RR42_RS29950	0.65	+0.9
2,086,608	-		RR42_RS29950	0.67	+1.0
2,086,635	+		RR42_RS29950	0.69	+0.0
2,086,636	-		RR42_RS29950	0.69	+0.0
2,086,636	-		RR42_RS29950	0.69	+0.7
2,086,643	+		RR42_RS29950	0.70	+0.1
2,086,644	-		RR42_RS29950	0.70	+1.5
2,086,644	-		RR42_RS29950	0.70	+0.6
2,086,680	-		RR42_RS29950	0.72	+1.9
2,086,680	-		RR42_RS29950	0.72	-0.8
2,086,680	-		RR42_RS29950	0.72	+1.3
2,086,714	-		RR42_RS29950	0.75	-0.4
2,086,723	+		RR42_RS29950	0.76	-2.2
2,086,723	+		RR42_RS29950	0.76	-0.0
2,086,723	+		RR42_RS29950	0.76	-0.1
2,086,724	-		RR42_RS29950	0.76	-1.4
2,086,829	+		RR42_RS29950	0.84	+0.9
2,086,893	+		RR42_RS29950	0.89	-0.7
2,086,893	+		RR42_RS29950	0.89	+0.4
2,086,894	-		RR42_RS29950	0.89	+0.1
2,086,959	+				-0.8
2,086,990	-				+1.5
2,087,012	-				-0.4
2,087,028	+				+0.8
2,087,071	-				+0.2
2,087,200	+		RR42_RS29955	0.11	-0.1
2,087,253	+		RR42_RS29955	0.15	-0.8
2,087,254	-		RR42_RS29955	0.15	+0.3
2,087,254	-		RR42_RS29955	0.15	-0.6
2,087,346	+		RR42_RS29955	0.21	+0.7
2,087,346	+		RR42_RS29955	0.21	+0.1
2,087,347	-		RR42_RS29955	0.22	+0.2
2,087,347	-		RR42_RS29955	0.22	-0.7
2,087,347	-		RR42_RS29955	0.22	+1.1
2,087,347	-		RR42_RS29955	0.22	+1.0
2,087,347	-		RR42_RS29955	0.22	+0.7
2,087,350	+		RR42_RS29955	0.22	-0.4
2,087,350	+		RR42_RS29955	0.22	-0.6
2,087,350	+		RR42_RS29955	0.22	+0.4
2,087,351	-		RR42_RS29955	0.22	-0.7
2,087,351	-		RR42_RS29955	0.22	+0.2
2,087,351	-		RR42_RS29955	0.22	+0.1
2,087,351	-		RR42_RS29955	0.22	-3.1
2,087,351	-		RR42_RS29955	0.22	+1.0
2,087,456	+		RR42_RS29955	0.29	-1.0
2,087,694	-		RR42_RS29955	0.46	-1.0
2,087,694	-		RR42_RS29955	0.46	-0.5
2,087,737	+		RR42_RS29955	0.49	+1.7
2,087,738	-		RR42_RS29955	0.49	-0.9
2,087,797	+		RR42_RS29955	0.53	-0.4
2,087,798	-		RR42_RS29955	0.53	+0.0
2,087,911	+		RR42_RS29955	0.61	+1.4
2,087,912	-		RR42_RS29955	0.61	-0.5
2,088,028	+		RR42_RS29955	0.70	+0.5
2,088,028	+		RR42_RS29955	0.70	+0.2
2,088,029	-		RR42_RS29955	0.70	-0.7
2,088,029	-		RR42_RS29955	0.70	-2.9
2,088,193	+		RR42_RS29955	0.81	+0.3
2,088,193	+		RR42_RS29955	0.81	-0.3
2,088,194	-		RR42_RS29955	0.81	-0.7
2,088,337	+				+1.6
2,088,370	+				-1.6
2,088,370	+				-2.4
2,088,383	+				-0.3
2,088,384	-				-1.7
2,088,384	-				+0.6
2,088,432	+				-0.3
2,088,432	+				-0.3
2,088,433	-				-3.3
2,088,533	-		RR42_RS29960	0.15	+0.6
2,088,541	+		RR42_RS29960	0.17	-0.4
2,088,541	+		RR42_RS29960	0.17	-1.4
2,088,542	-		RR42_RS29960	0.17	-0.2
2,088,542	-		RR42_RS29960	0.17	-1.4
2,088,649	+		RR42_RS29960	0.39	+1.3
2,088,650	-		RR42_RS29960	0.39	-0.2
2,088,677	+		RR42_RS29960	0.45	+1.8
2,088,677	+		RR42_RS29960	0.45	-0.5
2,088,677	+		RR42_RS29960	0.45	+0.6
2,088,677	+		RR42_RS29960	0.45	-0.8
2,088,677	+		RR42_RS29960	0.45	+0.2
2,088,678	-		RR42_RS29960	0.45	+0.3
2,088,678	-		RR42_RS29960	0.45	-0.1
2,088,686	+		RR42_RS29960	0.47	-1.0
2,088,687	-		RR42_RS29960	0.47	-0.2
2,088,687	-		RR42_RS29960	0.47	-2.2
2,088,687	-		RR42_RS29960	0.47	+0.1
2,088,829	+		RR42_RS29960	0.76	-1.4
2,088,830	-		RR42_RS29960	0.76	-2.0
2,088,866	+		RR42_RS29960	0.83	-0.0
2,089,007	+				-2.2
2,089,007	+				+1.9
2,089,077	+				+0.6
2,089,077	+				-0.9
2,089,077	+				-1.1
2,089,078	-				+0.0
2,089,078	-				-1.5
2,089,119	+				+1.2
2,089,119	+				+0.3
2,089,120	-				+0.7
2,089,120	-				-0.5
2,089,135	+				-0.2
2,089,136	-				+0.1
2,089,186	+				-1.2
2,089,187	-				+0.2
2,089,187	-				-0.2
2,089,238	+				-1.6
2,089,252	+				+0.7
2,089,252	+				+0.6
2,089,252	+				-1.1
2,089,252	+				+2.2
2,089,253	-				-0.1
2,089,262	+				-0.7
2,089,262	+				-0.7
2,089,262	+				+0.5
2,089,263	-				+1.3
2,089,352	+				+1.6
2,089,352	+				-0.2
2,089,352	+				-0.4
2,089,353	-				+0.6
2,089,374	+				-2.7
2,089,375	-				+0.3