Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS29270

Experiment: R2A with D-Cycloserine 0.5 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with D-Cycloserine 0.5 mg/ml
1,919,653	-		RR42_RS29265	0.59	+1.4
1,919,653	-		RR42_RS29265	0.59	-2.5
1,919,663	+		RR42_RS29265	0.59	+0.4
1,919,670	-		RR42_RS29265	0.60	-0.1
1,919,725	+		RR42_RS29265	0.65	-1.3
1,919,725	+		RR42_RS29265	0.65	-1.3
1,919,726	-		RR42_RS29265	0.65	-0.6
1,919,844	+		RR42_RS29265	0.75	+1.4
1,919,852	+		RR42_RS29265	0.76	+2.8
1,919,852	+		RR42_RS29265	0.76	+0.4
1,919,852	+		RR42_RS29265	0.76	-1.1
1,919,872	+		RR42_RS29265	0.78	-0.8
1,920,106	+				+0.9
1,920,107	-				-1.0
1,920,187	-				+1.2
1,920,187	-				-0.6
1,920,269	+				+2.2
1,920,269	+				-0.3
1,920,269	+				+0.7
1,920,269	+				+0.4
1,920,270	-				+0.1
1,920,270	-				+0.2
1,920,270	-				-1.2
1,920,276	-				+0.1
1,920,276	-				-1.5
1,920,300	-				+1.5
1,920,300	-				-1.1
1,920,309	+				+0.6
1,920,309	+				-0.8
1,920,309	+				-1.7
1,920,309	+				-1.0
1,920,310	-				-0.3
1,920,310	-				+0.3
1,920,310	-				-0.1
1,920,310	-				+0.2
1,920,310	-				-2.4
1,920,310	-				+0.5
1,920,310	-				+1.0
1,920,310	-				+0.6
1,920,405	+				-0.3
1,920,405	+				+0.2
1,920,405	+				-1.0
1,920,406	-				+1.9
1,920,406	-				+1.2
1,920,406	-				+0.2
1,920,407	+				+1.3
1,920,407	+				+2.0
1,920,407	+				+2.4
1,920,408	-				-2.6
1,920,408	-				-1.1
1,920,408	-				-0.2
1,920,408	-				-1.1
1,920,408	-				+0.2
1,920,408	-				+1.1
1,920,408	-				-0.4
1,920,408	-				-0.5
1,920,437	+				-0.4
1,920,437	+				-0.1
1,920,438	-				+0.3
1,920,462	+				-2.2
1,920,463	-				+0.7
1,920,463	-				-0.1
1,920,463	-				-1.0
1,920,463	-				-1.4
1,920,505	+				-1.8
1,920,506	-				-2.6
1,920,530	-				-0.1
1,920,628	+		RR42_RS29270	0.12	+0.5
1,920,628	+		RR42_RS29270	0.12	-1.7
1,920,629	-		RR42_RS29270	0.12	+1.0
1,920,629	-		RR42_RS29270	0.12	-0.7
1,920,836	+		RR42_RS29270	0.36	+0.9
1,920,837	-		RR42_RS29270	0.36	+0.2
1,920,837	-		RR42_RS29270	0.36	-0.5
1,920,837	-		RR42_RS29270	0.36	-0.2
1,920,939	-		RR42_RS29270	0.48	-1.2
1,921,018	+		RR42_RS29270	0.58	-0.8
1,921,019	-		RR42_RS29270	0.58	-2.4
1,921,092	-		RR42_RS29270	0.66	+0.6
1,921,092	-		RR42_RS29270	0.66	+0.3
1,921,092	-		RR42_RS29270	0.66	-0.6
1,921,126	+		RR42_RS29270	0.70	-0.3
1,921,126	+		RR42_RS29270	0.70	+1.4
1,921,126	+		RR42_RS29270	0.70	+0.4
1,921,126	+		RR42_RS29270	0.70	-0.6
1,921,126	+		RR42_RS29270	0.70	+0.3
1,921,126	+		RR42_RS29270	0.70	-1.1
1,921,127	-		RR42_RS29270	0.70	+1.1
1,921,127	-		RR42_RS29270	0.70	+0.6
1,921,127	-		RR42_RS29270	0.70	+0.1
1,921,127	-		RR42_RS29270	0.70	-1.4
1,921,127	-		RR42_RS29270	0.70	+0.5
1,921,355	-				+0.1
1,921,426	+				-2.0
1,921,426	+				-1.3
1,921,427	-				-0.1
1,921,462	+				+0.4
1,921,462	+				-2.2
1,921,463	-				-0.4
1,921,463	-				-2.3
1,921,463	-				-0.4
1,921,463	-				-0.3
1,921,466	+				+0.9
1,921,466	+				-2.9
1,921,466	+				-0.1
1,921,466	+				-0.1
1,921,467	-				+0.0
1,921,467	-				+0.2
1,921,467	-				+1.2
1,921,467	-				+2.0
1,921,467	-				-0.1
1,921,467	-				-0.7
1,921,467	-				+0.0
1,921,467	-				-0.4
1,921,509	+				-2.2
1,921,509	+				+0.1
1,921,509	+				-2.1
1,921,510	-				+0.3
1,921,510	-				-0.5
1,921,510	-				-1.2
1,921,510	-				-0.7
1,921,510	-				-0.3
1,921,550	+				-0.8
1,921,600	-		RR42_RS29275	0.12	-2.0
1,921,652	+		RR42_RS29275	0.18	-1.6
1,921,653	-		RR42_RS29275	0.19	-2.4
1,921,743	+		RR42_RS29275	0.30	-0.4
1,921,743	+		RR42_RS29275	0.30	+0.1
1,921,743	+		RR42_RS29275	0.30	+0.1
1,921,743	+		RR42_RS29275	0.30	+0.6
1,921,743	+		RR42_RS29275	0.30	-0.8
1,921,744	-		RR42_RS29275	0.30	-1.0
1,921,744	-		RR42_RS29275	0.30	-0.8
1,921,744	-		RR42_RS29275	0.30	-0.4
1,921,744	-		RR42_RS29275	0.30	+1.2
1,921,744	-		RR42_RS29275	0.30	-0.2
1,921,744	-		RR42_RS29275	0.30	-0.4
1,921,845	+		RR42_RS29275	0.42	+0.3
1,921,845	+		RR42_RS29275	0.42	-1.8
1,921,846	-		RR42_RS29275	0.42	+2.2
1,921,846	-		RR42_RS29275	0.42	-0.9
1,922,049	-		RR42_RS29275	0.67	-2.3
1,922,103	+		RR42_RS29275	0.74	-0.3
1,922,103	+		RR42_RS29275	0.74	-0.5
1,922,104	-		RR42_RS29275	0.74	-0.4
1,922,121	+		RR42_RS29275	0.76	-0.6
1,922,157	+		RR42_RS29275	0.81	-1.3
1,922,157	+		RR42_RS29275	0.81	+0.2
1,922,157	+		RR42_RS29275	0.81	-0.1
1,922,186	-		RR42_RS29275	0.84	-1.2
1,922,265	+				+3.6
1,922,266	-				-0.0
1,922,310	+				+0.6
1,922,310	+				-0.3
1,922,364	+				-0.1
1,922,364	+				-0.5
1,922,364	+				-1.3
1,922,365	-				+0.9
1,922,365	-				-1.9
1,922,365	-				-1.4
1,922,365	-				+0.9
1,922,365	-				+0.6
1,922,365	-				+0.9