Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS29265

Experiment: R2A with D-Cycloserine 0.5 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with D-Cycloserine 0.5 mg/ml
1,918,085	+		RR42_RS29260	0.34	+1.6
1,918,086	-		RR42_RS29260	0.34	+0.2
1,918,091	+		RR42_RS29260	0.35	+1.8
1,918,091	+		RR42_RS29260	0.35	+2.2
1,918,091	+		RR42_RS29260	0.35	+1.7
1,918,091	+		RR42_RS29260	0.35	-0.3
1,918,092	-		RR42_RS29260	0.35	+0.1
1,918,092	-		RR42_RS29260	0.35	-0.6
1,918,335	-		RR42_RS29260	0.53	-2.2
1,918,805	+		RR42_RS29260	0.88	+0.3
1,918,805	+		RR42_RS29260	0.88	-0.6
1,918,904	+				-1.1
1,918,904	+				-0.7
1,918,904	+				+0.2
1,919,364	+		RR42_RS29265	0.33	-3.0
1,919,491	+		RR42_RS29265	0.44	+0.9
1,919,492	-		RR42_RS29265	0.45	+2.2
1,919,492	-		RR42_RS29265	0.45	+1.5
1,919,653	-		RR42_RS29265	0.59	+1.4
1,919,653	-		RR42_RS29265	0.59	-2.5
1,919,663	+		RR42_RS29265	0.59	+0.4
1,919,670	-		RR42_RS29265	0.60	-0.1
1,919,725	+		RR42_RS29265	0.65	-1.3
1,919,725	+		RR42_RS29265	0.65	-1.3
1,919,726	-		RR42_RS29265	0.65	-0.6
1,919,844	+		RR42_RS29265	0.75	+1.4
1,919,852	+		RR42_RS29265	0.76	+2.8
1,919,852	+		RR42_RS29265	0.76	+0.4
1,919,852	+		RR42_RS29265	0.76	-1.1
1,919,872	+		RR42_RS29265	0.78	-0.8
1,920,106	+				+0.9
1,920,107	-				-1.0
1,920,187	-				+1.2
1,920,187	-				-0.6
1,920,269	+				+2.2
1,920,269	+				-0.3
1,920,269	+				+0.7
1,920,269	+				+0.4
1,920,270	-				+0.1
1,920,270	-				+0.2
1,920,270	-				-1.2
1,920,276	-				+0.1
1,920,276	-				-1.5
1,920,300	-				+1.5
1,920,300	-				-1.1
1,920,309	+				+0.6
1,920,309	+				-0.8
1,920,309	+				-1.7
1,920,309	+				-1.0
1,920,310	-				-0.3
1,920,310	-				+0.3
1,920,310	-				-0.1
1,920,310	-				+0.2
1,920,310	-				-2.4
1,920,310	-				+0.5
1,920,310	-				+1.0
1,920,310	-				+0.6
1,920,405	+				-0.3
1,920,405	+				+0.2
1,920,405	+				-1.0
1,920,406	-				+1.9
1,920,406	-				+1.2
1,920,406	-				+0.2
1,920,407	+				+1.3
1,920,407	+				+2.0
1,920,407	+				+2.4
1,920,408	-				-2.6
1,920,408	-				-1.1
1,920,408	-				-0.2
1,920,408	-				-1.1
1,920,408	-				+0.2
1,920,408	-				+1.1
1,920,408	-				-0.4
1,920,408	-				-0.5
1,920,437	+				-0.4
1,920,437	+				-0.1
1,920,438	-				+0.3
1,920,462	+				-2.2
1,920,463	-				+0.7
1,920,463	-				-0.1
1,920,463	-				-1.0
1,920,463	-				-1.4
1,920,505	+				-1.8
1,920,506	-				-2.6
1,920,530	-				-0.1
1,920,628	+		RR42_RS29270	0.12	+0.5
1,920,628	+		RR42_RS29270	0.12	-1.7
1,920,629	-		RR42_RS29270	0.12	+1.0
1,920,629	-		RR42_RS29270	0.12	-0.7
1,920,836	+		RR42_RS29270	0.36	+0.9
1,920,837	-		RR42_RS29270	0.36	+0.2
1,920,837	-		RR42_RS29270	0.36	-0.5
1,920,837	-		RR42_RS29270	0.36	-0.2
1,920,939	-		RR42_RS29270	0.48	-1.2
1,921,018	+		RR42_RS29270	0.58	-0.8
1,921,019	-		RR42_RS29270	0.58	-2.4
1,921,092	-		RR42_RS29270	0.66	+0.6
1,921,092	-		RR42_RS29270	0.66	+0.3
1,921,092	-		RR42_RS29270	0.66	-0.6
1,921,126	+		RR42_RS29270	0.70	-0.3
1,921,126	+		RR42_RS29270	0.70	+1.4
1,921,126	+		RR42_RS29270	0.70	+0.4
1,921,126	+		RR42_RS29270	0.70	-0.6
1,921,126	+		RR42_RS29270	0.70	+0.3
1,921,126	+		RR42_RS29270	0.70	-1.1
1,921,127	-		RR42_RS29270	0.70	+1.1
1,921,127	-		RR42_RS29270	0.70	+0.6
1,921,127	-		RR42_RS29270	0.70	+0.1
1,921,127	-		RR42_RS29270	0.70	-1.4
1,921,127	-		RR42_RS29270	0.70	+0.5