Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS29020

Experiment: R2A with D-Cycloserine 0.5 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS29015 and RR42_RS29020 are separated by 60 nucleotidesRR42_RS29020 and RR42_RS29025 are separated by 180 nucleotidesRR42_RS29025 and RR42_RS29030 are separated by 188 nucleotides RR42_RS29015: RR42_RS29015 - IQ calmodulin-binding motif-containing protein, at 1,865,746 to 1,866,765 _RS29015 RR42_RS29020: RR42_RS29020 - hypothetical protein, at 1,866,826 to 1,867,176 _RS29020 RR42_RS29025: RR42_RS29025 - hypothetical protein, at 1,867,357 to 1,867,539 _RS29025 RR42_RS29030: RR42_RS29030 - metal-dependent hydrolase, at 1,867,728 to 1,868,690 _RS29030 Position (kb) 1866 1867 1868Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1865.895 kb on + strand, within RR42_RS29015at 1865.895 kb on + strand, within RR42_RS29015at 1865.896 kb on - strand, within RR42_RS29015at 1865.896 kb on - strand, within RR42_RS29015at 1865.896 kb on - strand, within RR42_RS29015at 1865.896 kb on - strand, within RR42_RS29015at 1866.094 kb on + strand, within RR42_RS29015at 1866.094 kb on + strand, within RR42_RS29015at 1866.094 kb on + strand, within RR42_RS29015at 1866.095 kb on - strand, within RR42_RS29015at 1866.130 kb on + strand, within RR42_RS29015at 1866.130 kb on + strand, within RR42_RS29015at 1866.130 kb on + strand, within RR42_RS29015at 1866.167 kb on - strand, within RR42_RS29015at 1866.167 kb on - strand, within RR42_RS29015at 1866.389 kb on - strand, within RR42_RS29015at 1866.649 kb on + strand, within RR42_RS29015at 1866.650 kb on - strand, within RR42_RS29015at 1866.763 kb on + strandat 1866.886 kb on + strand, within RR42_RS29020at 1866.905 kb on + strand, within RR42_RS29020at 1866.905 kb on + strand, within RR42_RS29020at 1867.381 kb on + strand, within RR42_RS29025at 1867.601 kb on + strandat 1867.602 kb on - strandat 1867.602 kb on - strandat 1867.602 kb on - strandat 1867.637 kb on - strandat 1867.827 kb on + strand, within RR42_RS29030at 1867.827 kb on + strand, within RR42_RS29030at 1867.827 kb on + strand, within RR42_RS29030at 1867.827 kb on + strand, within RR42_RS29030at 1867.828 kb on - strand, within RR42_RS29030at 1867.828 kb on - strand, within RR42_RS29030at 1867.828 kb on - strand, within RR42_RS29030at 1867.980 kb on + strand, within RR42_RS29030at 1867.980 kb on + strand, within RR42_RS29030at 1868.046 kb on + strand, within RR42_RS29030at 1868.047 kb on - strand, within RR42_RS29030at 1868.047 kb on - strand, within RR42_RS29030at 1868.047 kb on - strand, within RR42_RS29030at 1868.047 kb on - strand, within RR42_RS29030

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with D-Cycloserine 0.5 mg/ml
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1,865,895 + RR42_RS29015 0.15 -2.7
1,865,895 + RR42_RS29015 0.15 +1.6
1,865,896 - RR42_RS29015 0.15 -2.2
1,865,896 - RR42_RS29015 0.15 +0.4
1,865,896 - RR42_RS29015 0.15 +0.8
1,865,896 - RR42_RS29015 0.15 +0.2
1,866,094 + RR42_RS29015 0.34 +0.6
1,866,094 + RR42_RS29015 0.34 +0.2
1,866,094 + RR42_RS29015 0.34 -0.5
1,866,095 - RR42_RS29015 0.34 -3.0
1,866,130 + RR42_RS29015 0.38 -1.8
1,866,130 + RR42_RS29015 0.38 +0.3
1,866,130 + RR42_RS29015 0.38 -1.2
1,866,167 - RR42_RS29015 0.41 -2.1
1,866,167 - RR42_RS29015 0.41 -0.2
1,866,389 - RR42_RS29015 0.63 -0.6
1,866,649 + RR42_RS29015 0.89 -0.4
1,866,650 - RR42_RS29015 0.89 -0.4
1,866,763 + +0.5
1,866,886 + RR42_RS29020 0.17 +0.1
1,866,905 + RR42_RS29020 0.23 -0.8
1,866,905 + RR42_RS29020 0.23 -0.3
1,867,381 + RR42_RS29025 0.13 -0.1
1,867,601 + +1.5
1,867,602 - -0.7
1,867,602 - -0.9
1,867,602 - -3.2
1,867,637 - +0.3
1,867,827 + RR42_RS29030 0.10 -2.6
1,867,827 + RR42_RS29030 0.10 +1.2
1,867,827 + RR42_RS29030 0.10 +0.9
1,867,827 + RR42_RS29030 0.10 -0.2
1,867,828 - RR42_RS29030 0.10 -0.7
1,867,828 - RR42_RS29030 0.10 -0.6
1,867,828 - RR42_RS29030 0.10 -4.1
1,867,980 + RR42_RS29030 0.26 -0.1
1,867,980 + RR42_RS29030 0.26 -1.0
1,868,046 + RR42_RS29030 0.33 +0.3
1,868,047 - RR42_RS29030 0.33 -1.0
1,868,047 - RR42_RS29030 0.33 -0.6
1,868,047 - RR42_RS29030 0.33 -0.1
1,868,047 - RR42_RS29030 0.33 +1.0

Or see this region's nucleotide sequence