Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS25250

Experiment: R2A with D-Cycloserine 0.5 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with D-Cycloserine 0.5 mg/ml
1,004,402	-				+0.9
1,004,463	-				+0.7
1,004,463	-				+0.4
1,004,496	-				+0.9
1,004,635	+		RR42_RS25245	0.12	-0.4
1,004,635	+		RR42_RS25245	0.12	+0.4
1,004,635	+		RR42_RS25245	0.12	-1.9
1,004,636	-		RR42_RS25245	0.13	-0.4
1,004,636	-		RR42_RS25245	0.13	-0.7
1,004,758	-		RR42_RS25245	0.31	-0.1
1,004,999	+		RR42_RS25245	0.68	+0.6
1,004,999	+		RR42_RS25245	0.68	+0.1
1,005,000	-		RR42_RS25245	0.68	-0.6
1,005,043	+		RR42_RS25245	0.75	-2.2
1,005,043	+		RR42_RS25245	0.75	-0.1
1,005,184	+				+0.2
1,005,254	+				+0.7
1,005,255	-				+0.7
1,005,255	-				+0.3
1,005,255	-				+1.3
1,005,291	+				+0.3
1,005,291	+				+0.7
1,005,407	+		RR42_RS25250	0.17	-0.4
1,005,408	-		RR42_RS25250	0.17	-3.2
1,005,408	-		RR42_RS25250	0.17	-0.8
1,005,668	-		RR42_RS25250	0.44	+1.9
1,005,892	+		RR42_RS25250	0.66	+0.2
1,005,892	+		RR42_RS25250	0.66	-0.3
1,005,893	-		RR42_RS25250	0.66	-0.6
1,005,927	+		RR42_RS25250	0.70	+1.1
1,005,959	-		RR42_RS25250	0.73	-0.3
1,006,141	+				+0.6
1,006,283	-				-1.1
1,006,367	+				+0.4
1,006,457	+		RR42_RS25255	0.11	-1.9
1,006,458	-		RR42_RS25255	0.11	-0.2
1,006,461	+		RR42_RS25255	0.11	-0.2
1,006,461	+		RR42_RS25255	0.11	+0.3
1,006,745	+		RR42_RS25255	0.36	-0.8
1,006,851	+		RR42_RS25255	0.45	+0.8
1,006,909	-		RR42_RS25255	0.50	-1.7
1,006,923	-		RR42_RS25255	0.51	-0.5
1,006,923	-		RR42_RS25255	0.51	+1.3
1,007,078	+		RR42_RS25255	0.64	+1.2
1,007,111	+		RR42_RS25255	0.67	+0.6
1,007,111	+		RR42_RS25255	0.67	-1.6
1,007,112	-		RR42_RS25255	0.67	+0.1