Experiment: R2A with D-Cycloserine 0.5 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS25115 and RR42_RS25120 are separated by 39 nucleotides RR42_RS25120 and RR42_RS25125 are separated by 323 nucleotides
RR42_RS25115: RR42_RS25115 - IclR family transcriptional regulator, at 972,019 to 972,762
_RS25115
RR42_RS25120: RR42_RS25120 - IclR family transcriptional regulator, at 972,802 to 973,581
_RS25120
RR42_RS25125: RR42_RS25125 - 3-oxoacyl-ACP reductase, at 973,905 to 974,654
_RS25125
Position (kb) 972
973
974 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 971.889 kb on + strand at 971.911 kb on + strand at 972.172 kb on + strand, within RR42_RS25115 at 972.226 kb on + strand, within RR42_RS25115 at 972.226 kb on + strand, within RR42_RS25115 at 972.227 kb on - strand, within RR42_RS25115 at 972.473 kb on - strand, within RR42_RS25115 at 972.563 kb on - strand, within RR42_RS25115 at 972.563 kb on - strand, within RR42_RS25115 at 972.563 kb on - strand, within RR42_RS25115 at 972.813 kb on + strand at 972.813 kb on + strand at 972.814 kb on - strand at 972.993 kb on - strand, within RR42_RS25120 at 972.993 kb on - strand, within RR42_RS25120 at 973.106 kb on + strand, within RR42_RS25120 at 973.235 kb on + strand, within RR42_RS25120 at 973.235 kb on + strand, within RR42_RS25120 at 973.235 kb on + strand, within RR42_RS25120 at 973.243 kb on - strand, within RR42_RS25120 at 973.243 kb on - strand, within RR42_RS25120 at 973.347 kb on - strand, within RR42_RS25120 at 973.507 kb on - strand at 973.680 kb on + strand at 973.680 kb on + strand at 973.680 kb on + strand at 973.680 kb on + strand at 973.815 kb on + strand at 973.817 kb on + strand at 973.818 kb on - strand at 973.818 kb on - strand at 973.888 kb on + strand at 974.200 kb on - strand, within RR42_RS25125 at 974.200 kb on - strand, within RR42_RS25125 at 974.200 kb on - strand, within RR42_RS25125 at 974.537 kb on + strand, within RR42_RS25125 at 974.537 kb on + strand, within RR42_RS25125 at 974.537 kb on + strand, within RR42_RS25125 at 974.565 kb on - strand, within RR42_RS25125 at 974.565 kb on - strand, within RR42_RS25125
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with D-Cycloserine 0.5 mg/ml remove 971,889 + -0.6 971,911 + +0.2 972,172 + RR42_RS25115 0.21 +0.8 972,226 + RR42_RS25115 0.28 -0.3 972,226 + RR42_RS25115 0.28 +0.1 972,227 - RR42_RS25115 0.28 -0.3 972,473 - RR42_RS25115 0.61 +0.3 972,563 - RR42_RS25115 0.73 +0.1 972,563 - RR42_RS25115 0.73 -0.4 972,563 - RR42_RS25115 0.73 -0.1 972,813 + -0.4 972,813 + +0.8 972,814 - +0.4 972,993 - RR42_RS25120 0.24 -3.6 972,993 - RR42_RS25120 0.24 -0.1 973,106 + RR42_RS25120 0.39 -0.7 973,235 + RR42_RS25120 0.56 -1.1 973,235 + RR42_RS25120 0.56 +0.5 973,235 + RR42_RS25120 0.56 -0.4 973,243 - RR42_RS25120 0.57 -1.9 973,243 - RR42_RS25120 0.57 +0.3 973,347 - RR42_RS25120 0.70 -2.2 973,507 - +0.4 973,680 + +0.5 973,680 + +0.6 973,680 + -0.1 973,680 + +0.9 973,815 + -0.6 973,817 + +1.9 973,818 - -1.5 973,818 - -1.7 973,888 + -0.2 974,200 - RR42_RS25125 0.39 +0.5 974,200 - RR42_RS25125 0.39 +2.7 974,200 - RR42_RS25125 0.39 +1.4 974,537 + RR42_RS25125 0.84 +0.4 974,537 + RR42_RS25125 0.84 +0.8 974,537 + RR42_RS25125 0.84 +1.1 974,565 - RR42_RS25125 0.88 +0.7 974,565 - RR42_RS25125 0.88 +1.3
Or see this region's nucleotide sequence