Experiment: R2A with D-Cycloserine 0.5 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS24875 and RR42_RS24880 overlap by 8 nucleotides RR42_RS24880 and RR42_RS24885 are separated by 40 nucleotides RR42_RS24885 and RR42_RS24890 are separated by 346 nucleotides
RR42_RS24875: RR42_RS24875 - IclR family transcriptional regulator, at 919,526 to 920,332
_RS24875
RR42_RS24880: RR42_RS24880 - hypothetical protein, at 920,325 to 920,600
_RS24880
RR42_RS24885: RR42_RS24885 - IclR family transcriptional regulator, at 920,641 to 921,420
_RS24885
RR42_RS24890: RR42_RS24890 - acetate--CoA ligase, at 921,767 to 923,695
_RS24890
Position (kb) 920
921
922 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 919.757 kb on + strand, within RR42_RS24875 at 919.758 kb on - strand, within RR42_RS24875 at 919.859 kb on - strand, within RR42_RS24875 at 919.864 kb on + strand, within RR42_RS24875 at 919.868 kb on + strand, within RR42_RS24875 at 919.868 kb on + strand, within RR42_RS24875 at 919.869 kb on - strand, within RR42_RS24875 at 919.869 kb on - strand, within RR42_RS24875 at 919.869 kb on - strand, within RR42_RS24875 at 919.924 kb on - strand, within RR42_RS24875 at 919.936 kb on - strand, within RR42_RS24875 at 920.036 kb on + strand, within RR42_RS24875 at 920.036 kb on + strand, within RR42_RS24875 at 920.137 kb on + strand, within RR42_RS24875 at 920.138 kb on - strand, within RR42_RS24875 at 920.344 kb on + strand at 920.514 kb on - strand, within RR42_RS24880 at 920.532 kb on - strand, within RR42_RS24880 at 920.613 kb on + strand at 920.623 kb on - strand at 920.875 kb on + strand, within RR42_RS24885 at 920.876 kb on - strand, within RR42_RS24885 at 920.967 kb on + strand, within RR42_RS24885 at 920.986 kb on + strand, within RR42_RS24885 at 920.986 kb on + strand, within RR42_RS24885 at 920.986 kb on + strand, within RR42_RS24885 at 920.987 kb on - strand, within RR42_RS24885 at 920.987 kb on - strand, within RR42_RS24885 at 920.987 kb on - strand, within RR42_RS24885 at 921.115 kb on + strand, within RR42_RS24885 at 921.115 kb on + strand, within RR42_RS24885 at 921.116 kb on - strand, within RR42_RS24885 at 921.173 kb on + strand, within RR42_RS24885 at 921.173 kb on + strand, within RR42_RS24885 at 921.173 kb on + strand, within RR42_RS24885 at 921.244 kb on + strand, within RR42_RS24885 at 921.444 kb on - strand at 921.470 kb on - strand at 921.525 kb on + strand at 921.594 kb on + strand at 921.741 kb on - strand at 921.852 kb on - strand at 921.950 kb on + strand at 921.950 kb on + strand at 921.951 kb on - strand at 921.951 kb on - strand at 921.954 kb on + strand at 921.955 kb on - strand at 921.955 kb on - strand at 922.109 kb on + strand, within RR42_RS24890
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with D-Cycloserine 0.5 mg/ml remove 919,757 + RR42_RS24875 0.29 +0.1 919,758 - RR42_RS24875 0.29 -0.1 919,859 - RR42_RS24875 0.41 +0.2 919,864 + RR42_RS24875 0.42 -2.5 919,868 + RR42_RS24875 0.42 +4.1 919,868 + RR42_RS24875 0.42 -1.2 919,869 - RR42_RS24875 0.43 -0.1 919,869 - RR42_RS24875 0.43 -0.2 919,869 - RR42_RS24875 0.43 +1.7 919,924 - RR42_RS24875 0.49 -0.5 919,936 - RR42_RS24875 0.51 -0.3 920,036 + RR42_RS24875 0.63 +1.3 920,036 + RR42_RS24875 0.63 -0.6 920,137 + RR42_RS24875 0.76 -0.4 920,138 - RR42_RS24875 0.76 +1.1 920,344 + -0.2 920,514 - RR42_RS24880 0.68 +0.9 920,532 - RR42_RS24880 0.75 +0.7 920,613 + +0.9 920,623 - -0.2 920,875 + RR42_RS24885 0.30 -0.6 920,876 - RR42_RS24885 0.30 -0.3 920,967 + RR42_RS24885 0.42 +0.2 920,986 + RR42_RS24885 0.44 +1.6 920,986 + RR42_RS24885 0.44 -0.5 920,986 + RR42_RS24885 0.44 +1.2 920,987 - RR42_RS24885 0.44 -2.6 920,987 - RR42_RS24885 0.44 +0.5 920,987 - RR42_RS24885 0.44 -1.2 921,115 + RR42_RS24885 0.61 -1.5 921,115 + RR42_RS24885 0.61 -1.3 921,116 - RR42_RS24885 0.61 +2.3 921,173 + RR42_RS24885 0.68 +1.8 921,173 + RR42_RS24885 0.68 +0.5 921,173 + RR42_RS24885 0.68 +1.1 921,244 + RR42_RS24885 0.77 -0.6 921,444 - +1.9 921,470 - -1.9 921,525 + +0.0 921,594 + +0.5 921,741 - -0.2 921,852 - -0.5 921,950 + +1.9 921,950 + -0.4 921,951 - +0.6 921,951 - +1.0 921,954 + +0.8 921,955 - +0.9 921,955 - +1.2 922,109 + RR42_RS24890 0.18 +0.9
Or see this region's nucleotide sequence