Experiment: R2A with D-Cycloserine 0.5 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS24480 and RR42_RS24485 are separated by 182 nucleotides RR42_RS24485 and RR42_RS24490 are separated by 60 nucleotides RR42_RS24490 and RR42_RS24495 are separated by 487 nucleotides
RR42_RS24480: RR42_RS24480 - hypothetical protein, at 826,679 to 827,011
_RS24480
RR42_RS24485: RR42_RS24485 - hypothetical protein, at 827,194 to 827,631
_RS24485
RR42_RS24490: RR42_RS24490 - hypothetical protein, at 827,692 to 828,036
_RS24490
RR42_RS24495: RR42_RS24495 - hypothetical protein, at 828,524 to 829,540
_RS24495
Position (kb) 827
828
829 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 826.719 kb on + strand, within RR42_RS24480 at 826.719 kb on + strand, within RR42_RS24480 at 826.825 kb on - strand, within RR42_RS24480 at 826.878 kb on + strand, within RR42_RS24480 at 826.879 kb on - strand, within RR42_RS24480 at 826.879 kb on - strand, within RR42_RS24480 at 826.879 kb on - strand, within RR42_RS24480 at 826.995 kb on + strand at 827.333 kb on + strand, within RR42_RS24485 at 827.368 kb on - strand, within RR42_RS24485 at 827.403 kb on + strand, within RR42_RS24485 at 827.403 kb on + strand, within RR42_RS24485 at 827.466 kb on - strand, within RR42_RS24485 at 827.495 kb on + strand, within RR42_RS24485 at 827.496 kb on - strand, within RR42_RS24485 at 827.496 kb on - strand, within RR42_RS24485 at 827.496 kb on - strand, within RR42_RS24485 at 827.529 kb on - strand, within RR42_RS24485 at 827.567 kb on + strand, within RR42_RS24485 at 827.567 kb on + strand, within RR42_RS24485 at 827.567 kb on + strand, within RR42_RS24485 at 827.910 kb on - strand, within RR42_RS24490 at 827.936 kb on + strand, within RR42_RS24490 at 828.053 kb on + strand at 828.053 kb on + strand at 828.058 kb on - strand at 828.058 kb on - strand at 828.112 kb on - strand at 828.135 kb on + strand at 828.135 kb on + strand at 828.135 kb on + strand at 828.135 kb on + strand at 828.136 kb on - strand at 828.267 kb on + strand at 828.323 kb on + strand at 828.324 kb on - strand at 828.324 kb on - strand at 828.325 kb on + strand at 828.325 kb on + strand at 828.357 kb on - strand at 828.357 kb on - strand at 828.626 kb on - strand, within RR42_RS24495 at 828.626 kb on - strand, within RR42_RS24495 at 828.665 kb on + strand, within RR42_RS24495 at 828.665 kb on + strand, within RR42_RS24495 at 828.666 kb on - strand, within RR42_RS24495 at 828.680 kb on + strand, within RR42_RS24495 at 828.828 kb on + strand, within RR42_RS24495 at 828.897 kb on + strand, within RR42_RS24495 at 828.933 kb on + strand, within RR42_RS24495 at 828.933 kb on + strand, within RR42_RS24495
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with D-Cycloserine 0.5 mg/ml remove 826,719 + RR42_RS24480 0.12 +1.5 826,719 + RR42_RS24480 0.12 +2.1 826,825 - RR42_RS24480 0.44 +0.4 826,878 + RR42_RS24480 0.60 -0.7 826,879 - RR42_RS24480 0.60 +1.0 826,879 - RR42_RS24480 0.60 +0.4 826,879 - RR42_RS24480 0.60 -1.4 826,995 + -1.9 827,333 + RR42_RS24485 0.32 +0.7 827,368 - RR42_RS24485 0.40 +0.6 827,403 + RR42_RS24485 0.48 +1.6 827,403 + RR42_RS24485 0.48 -3.2 827,466 - RR42_RS24485 0.62 -0.3 827,495 + RR42_RS24485 0.69 +0.3 827,496 - RR42_RS24485 0.69 -1.3 827,496 - RR42_RS24485 0.69 -1.0 827,496 - RR42_RS24485 0.69 -0.5 827,529 - RR42_RS24485 0.76 +0.9 827,567 + RR42_RS24485 0.85 +0.1 827,567 + RR42_RS24485 0.85 -2.2 827,567 + RR42_RS24485 0.85 +1.0 827,910 - RR42_RS24490 0.63 +0.1 827,936 + RR42_RS24490 0.71 -1.8 828,053 + +1.9 828,053 + +1.2 828,058 - -0.1 828,058 - +1.0 828,112 - -0.0 828,135 + +0.8 828,135 + -2.0 828,135 + +0.8 828,135 + -0.0 828,136 - -2.7 828,267 + +0.7 828,323 + +0.2 828,324 - +1.1 828,324 - -0.6 828,325 + +0.4 828,325 + +1.0 828,357 - +0.3 828,357 - +0.2 828,626 - RR42_RS24495 0.10 -2.5 828,626 - RR42_RS24495 0.10 -2.3 828,665 + RR42_RS24495 0.14 -0.3 828,665 + RR42_RS24495 0.14 -0.8 828,666 - RR42_RS24495 0.14 -0.0 828,680 + RR42_RS24495 0.15 -0.3 828,828 + RR42_RS24495 0.30 -1.3 828,897 + RR42_RS24495 0.37 -3.3 828,933 + RR42_RS24495 0.40 +1.2 828,933 + RR42_RS24495 0.40 -0.4
Or see this region's nucleotide sequence