Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS24175

Experiment: R2A with D-Cycloserine 0.5 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS24170 and RR42_RS24175 are separated by 239 nucleotidesRR42_RS24175 and RR42_RS24180 are separated by 29 nucleotides RR42_RS24170: RR42_RS24170 - hypothetical protein, at 748,190 to 749,047 _RS24170 RR42_RS24175: RR42_RS24175 - isopropylmalate isomerase, at 749,287 to 750,696 _RS24175 RR42_RS24180: RR42_RS24180 - 3-isopropylmalate dehydratase, at 750,726 to 751,376 _RS24180 Position (kb) 749 750 751Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 748.295 kb on + strand, within RR42_RS24170at 748.304 kb on + strand, within RR42_RS24170at 748.304 kb on + strand, within RR42_RS24170at 748.359 kb on + strand, within RR42_RS24170at 748.449 kb on - strand, within RR42_RS24170at 748.492 kb on - strand, within RR42_RS24170at 748.754 kb on - strand, within RR42_RS24170at 748.816 kb on - strand, within RR42_RS24170at 748.816 kb on - strand, within RR42_RS24170at 748.816 kb on - strand, within RR42_RS24170at 748.877 kb on + strand, within RR42_RS24170at 748.877 kb on + strand, within RR42_RS24170at 748.878 kb on - strand, within RR42_RS24170at 748.878 kb on - strand, within RR42_RS24170at 748.878 kb on - strand, within RR42_RS24170at 748.916 kb on + strand, within RR42_RS24170at 748.916 kb on + strand, within RR42_RS24170at 748.916 kb on + strand, within RR42_RS24170at 748.938 kb on + strand, within RR42_RS24170at 748.939 kb on - strand, within RR42_RS24170at 748.979 kb on + strandat 748.979 kb on + strandat 749.045 kb on + strandat 749.046 kb on - strandat 749.303 kb on - strandat 749.362 kb on + strandat 749.362 kb on + strandat 749.362 kb on + strandat 749.363 kb on - strandat 749.363 kb on - strandat 749.677 kb on - strand, within RR42_RS24175at 750.010 kb on + strand, within RR42_RS24175at 750.044 kb on + strand, within RR42_RS24175at 750.045 kb on - strand, within RR42_RS24175at 750.259 kb on + strand, within RR42_RS24175at 750.259 kb on + strand, within RR42_RS24175at 750.259 kb on + strand, within RR42_RS24175at 750.260 kb on - strand, within RR42_RS24175at 750.260 kb on - strand, within RR42_RS24175at 750.260 kb on - strand, within RR42_RS24175at 750.340 kb on - strand, within RR42_RS24175at 750.340 kb on - strand, within RR42_RS24175at 750.586 kb on - strandat 750.586 kb on - strandat 750.659 kb on + strandat 750.659 kb on + strandat 750.660 kb on - strandat 750.660 kb on - strandat 750.702 kb on + strandat 750.703 kb on - strandat 750.706 kb on + strandat 750.706 kb on + strandat 750.707 kb on - strandat 750.742 kb on + strandat 750.742 kb on + strandat 750.742 kb on + strandat 750.742 kb on + strandat 750.931 kb on + strand, within RR42_RS24180at 751.087 kb on - strand, within RR42_RS24180at 751.167 kb on + strand, within RR42_RS24180at 751.167 kb on + strand, within RR42_RS24180at 751.168 kb on - strand, within RR42_RS24180at 751.225 kb on - strand, within RR42_RS24180at 751.254 kb on + strand, within RR42_RS24180at 751.255 kb on - strand, within RR42_RS24180at 751.379 kb on + strandat 751.379 kb on + strandat 751.379 kb on + strandat 751.379 kb on + strandat 751.379 kb on + strandat 751.380 kb on - strandat 751.457 kb on + strandat 751.458 kb on - strandat 751.472 kb on + strandat 751.499 kb on + strandat 751.521 kb on - strandat 751.557 kb on + strandat 751.558 kb on - strandat 751.601 kb on + strandat 751.617 kb on + strandat 751.618 kb on - strandat 751.630 kb on + strandat 751.630 kb on + strandat 751.669 kb on + strandat 751.669 kb on + strandat 751.692 kb on + strandat 751.692 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with D-Cycloserine 0.5 mg/ml
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748,295 + RR42_RS24170 0.12 +0.7
748,304 + RR42_RS24170 0.13 -0.1
748,304 + RR42_RS24170 0.13 -0.3
748,359 + RR42_RS24170 0.20 +0.0
748,449 - RR42_RS24170 0.30 +1.0
748,492 - RR42_RS24170 0.35 -0.5
748,754 - RR42_RS24170 0.66 -0.5
748,816 - RR42_RS24170 0.73 +0.6
748,816 - RR42_RS24170 0.73 +0.9
748,816 - RR42_RS24170 0.73 +0.1
748,877 + RR42_RS24170 0.80 +0.9
748,877 + RR42_RS24170 0.80 +2.5
748,878 - RR42_RS24170 0.80 -2.0
748,878 - RR42_RS24170 0.80 +0.4
748,878 - RR42_RS24170 0.80 -1.2
748,916 + RR42_RS24170 0.85 -1.3
748,916 + RR42_RS24170 0.85 -3.0
748,916 + RR42_RS24170 0.85 -1.3
748,938 + RR42_RS24170 0.87 +0.0
748,939 - RR42_RS24170 0.87 +0.4
748,979 + +1.6
748,979 + +0.5
749,045 + -0.3
749,046 - +0.3
749,303 - -1.8
749,362 + -0.9
749,362 + +0.8
749,362 + -1.7
749,363 - -0.1
749,363 - -0.1
749,677 - RR42_RS24175 0.28 -1.1
750,010 + RR42_RS24175 0.51 -1.5
750,044 + RR42_RS24175 0.54 +2.1
750,045 - RR42_RS24175 0.54 +0.3
750,259 + RR42_RS24175 0.69 -1.1
750,259 + RR42_RS24175 0.69 +0.2
750,259 + RR42_RS24175 0.69 -2.6
750,260 - RR42_RS24175 0.69 -0.5
750,260 - RR42_RS24175 0.69 -0.5
750,260 - RR42_RS24175 0.69 -0.4
750,340 - RR42_RS24175 0.75 +0.0
750,340 - RR42_RS24175 0.75 -0.4
750,586 - -0.1
750,586 - +0.8
750,659 + +0.3
750,659 + -0.1
750,660 - -0.1
750,660 - +1.0
750,702 + -0.1
750,703 - -0.8
750,706 + -1.8
750,706 + +1.7
750,707 - -3.9
750,742 + -0.5
750,742 + +0.6
750,742 + +0.2
750,742 + +0.2
750,931 + RR42_RS24180 0.31 +1.3
751,087 - RR42_RS24180 0.55 +1.3
751,167 + RR42_RS24180 0.68 -0.6
751,167 + RR42_RS24180 0.68 +0.7
751,168 - RR42_RS24180 0.68 -0.6
751,225 - RR42_RS24180 0.77 +2.0
751,254 + RR42_RS24180 0.81 +1.3
751,255 - RR42_RS24180 0.81 -1.6
751,379 + +0.0
751,379 + -0.8
751,379 + +0.2
751,379 + -0.8
751,379 + +0.3
751,380 - +2.2
751,457 + -2.3
751,458 - -0.7
751,472 + +0.2
751,499 + +0.6
751,521 - -0.8
751,557 + +0.3
751,558 - -0.4
751,601 + +1.2
751,617 + -1.1
751,618 - +0.3
751,630 + -1.1
751,630 + +0.3
751,669 + -0.8
751,669 + +0.3
751,692 + -0.1
751,692 + +1.2

Or see this region's nucleotide sequence