Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS23780

Experiment: R2A with D-Cycloserine 0.5 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS23775 and RR42_RS23780 overlap by 4 nucleotidesRR42_RS23780 and RR42_RS23785 are separated by 305 nucleotidesRR42_RS23785 and RR42_RS23790 are separated by 385 nucleotides RR42_RS23775: RR42_RS23775 - hypothetical protein, at 657,568 to 658,818 _RS23775 RR42_RS23780: RR42_RS23780 - hypothetical protein, at 658,815 to 659,753 _RS23780 RR42_RS23785: RR42_RS23785 - hypothetical protein, at 660,059 to 660,319 _RS23785 RR42_RS23790: RR42_RS23790 - hypothetical protein, at 660,705 to 662,045 _RS23790 Position (kb) 658 659 660Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 657.817 kb on + strand, within RR42_RS23775at 657.817 kb on + strand, within RR42_RS23775at 657.817 kb on + strand, within RR42_RS23775at 657.817 kb on + strand, within RR42_RS23775at 657.817 kb on + strand, within RR42_RS23775at 657.817 kb on + strand, within RR42_RS23775at 657.818 kb on - strand, within RR42_RS23775at 657.827 kb on - strand, within RR42_RS23775at 657.827 kb on - strand, within RR42_RS23775at 657.833 kb on + strand, within RR42_RS23775at 657.833 kb on + strand, within RR42_RS23775at 657.834 kb on - strand, within RR42_RS23775at 657.838 kb on - strand, within RR42_RS23775at 657.865 kb on + strand, within RR42_RS23775at 657.866 kb on - strand, within RR42_RS23775at 657.866 kb on - strand, within RR42_RS23775at 657.871 kb on + strand, within RR42_RS23775at 657.871 kb on + strand, within RR42_RS23775at 657.871 kb on + strand, within RR42_RS23775at 657.872 kb on - strand, within RR42_RS23775at 657.872 kb on - strand, within RR42_RS23775at 657.872 kb on - strand, within RR42_RS23775at 657.872 kb on - strand, within RR42_RS23775at 657.872 kb on - strand, within RR42_RS23775at 657.900 kb on - strand, within RR42_RS23775at 657.929 kb on - strand, within RR42_RS23775at 657.929 kb on - strand, within RR42_RS23775at 657.929 kb on - strand, within RR42_RS23775at 657.929 kb on - strand, within RR42_RS23775at 657.929 kb on - strand, within RR42_RS23775at 658.073 kb on + strand, within RR42_RS23775at 658.186 kb on - strand, within RR42_RS23775at 658.245 kb on + strand, within RR42_RS23775at 658.313 kb on + strand, within RR42_RS23775at 658.313 kb on + strand, within RR42_RS23775at 658.313 kb on + strand, within RR42_RS23775at 658.313 kb on + strand, within RR42_RS23775at 658.314 kb on - strand, within RR42_RS23775at 658.314 kb on - strand, within RR42_RS23775at 658.314 kb on - strand, within RR42_RS23775at 658.317 kb on + strand, within RR42_RS23775at 658.317 kb on + strand, within RR42_RS23775at 658.317 kb on + strand, within RR42_RS23775at 658.317 kb on + strand, within RR42_RS23775at 658.317 kb on + strand, within RR42_RS23775at 658.317 kb on + strand, within RR42_RS23775at 658.317 kb on + strand, within RR42_RS23775at 658.317 kb on + strand, within RR42_RS23775at 658.317 kb on + strand, within RR42_RS23775at 658.318 kb on - strand, within RR42_RS23775at 658.318 kb on - strand, within RR42_RS23775at 658.318 kb on - strand, within RR42_RS23775at 658.318 kb on - strand, within RR42_RS23775at 658.318 kb on - strand, within RR42_RS23775at 658.331 kb on + strand, within RR42_RS23775at 658.425 kb on + strand, within RR42_RS23775at 658.537 kb on - strand, within RR42_RS23775at 658.613 kb on + strand, within RR42_RS23775at 658.614 kb on - strand, within RR42_RS23775at 658.717 kb on + strandat 658.718 kb on - strandat 658.756 kb on + strandat 658.757 kb on + strandat 658.758 kb on - strandat 658.758 kb on - strandat 658.758 kb on - strandat 658.768 kb on + strandat 658.768 kb on + strandat 658.814 kb on + strandat 658.849 kb on + strandat 658.849 kb on + strandat 658.850 kb on - strandat 658.850 kb on - strandat 658.850 kb on - strandat 658.850 kb on - strandat 658.909 kb on + strand, within RR42_RS23780at 658.960 kb on + strand, within RR42_RS23780at 659.117 kb on - strand, within RR42_RS23780at 659.124 kb on + strand, within RR42_RS23780at 659.125 kb on - strand, within RR42_RS23780at 659.129 kb on + strand, within RR42_RS23780at 659.129 kb on + strand, within RR42_RS23780at 659.129 kb on + strand, within RR42_RS23780at 659.130 kb on - strand, within RR42_RS23780at 659.263 kb on + strand, within RR42_RS23780at 659.304 kb on + strand, within RR42_RS23780at 659.304 kb on + strand, within RR42_RS23780at 659.305 kb on - strand, within RR42_RS23780at 659.306 kb on + strand, within RR42_RS23780at 659.307 kb on - strand, within RR42_RS23780at 659.558 kb on - strand, within RR42_RS23780at 659.656 kb on - strand, within RR42_RS23780at 659.656 kb on - strand, within RR42_RS23780at 659.656 kb on - strand, within RR42_RS23780at 659.656 kb on - strand, within RR42_RS23780at 659.656 kb on - strand, within RR42_RS23780at 659.656 kb on - strand, within RR42_RS23780at 659.656 kb on - strand, within RR42_RS23780at 659.819 kb on + strandat 659.819 kb on + strandat 659.819 kb on + strandat 659.903 kb on - strandat 659.903 kb on - strandat 659.903 kb on - strandat 659.934 kb on + strandat 660.068 kb on - strandat 660.075 kb on - strandat 660.095 kb on + strand, within RR42_RS23785at 660.190 kb on + strand, within RR42_RS23785at 660.190 kb on + strand, within RR42_RS23785at 660.191 kb on - strand, within RR42_RS23785at 660.191 kb on - strand, within RR42_RS23785at 660.191 kb on - strand, within RR42_RS23785at 660.193 kb on - strand, within RR42_RS23785at 660.215 kb on + strand, within RR42_RS23785at 660.215 kb on + strand, within RR42_RS23785at 660.216 kb on - strand, within RR42_RS23785at 660.216 kb on - strand, within RR42_RS23785at 660.317 kb on + strandat 660.320 kb on + strandat 660.321 kb on - strandat 660.329 kb on - strandat 660.330 kb on + strandat 660.330 kb on + strandat 660.331 kb on - strandat 660.331 kb on - strandat 660.380 kb on + strandat 660.381 kb on - strandat 660.381 kb on - strandat 660.426 kb on + strandat 660.426 kb on + strandat 660.533 kb on + strandat 660.534 kb on - strandat 660.534 kb on - strandat 660.536 kb on + strandat 660.536 kb on + strandat 660.536 kb on + strandat 660.537 kb on - strandat 660.547 kb on - strandat 660.589 kb on - strandat 660.589 kb on - strandat 660.678 kb on + strandat 660.678 kb on + strandat 660.678 kb on + strandat 660.678 kb on + strandat 660.679 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with D-Cycloserine 0.5 mg/ml
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657,817 + RR42_RS23775 0.20 -0.3
657,817 + RR42_RS23775 0.20 +0.1
657,817 + RR42_RS23775 0.20 +0.8
657,817 + RR42_RS23775 0.20 -0.4
657,817 + RR42_RS23775 0.20 -0.5
657,817 + RR42_RS23775 0.20 +0.6
657,818 - RR42_RS23775 0.20 +0.2
657,827 - RR42_RS23775 0.21 +0.7
657,827 - RR42_RS23775 0.21 -0.5
657,833 + RR42_RS23775 0.21 -1.9
657,833 + RR42_RS23775 0.21 +0.5
657,834 - RR42_RS23775 0.21 -0.1
657,838 - RR42_RS23775 0.22 +1.7
657,865 + RR42_RS23775 0.24 -0.2
657,866 - RR42_RS23775 0.24 -1.0
657,866 - RR42_RS23775 0.24 -1.9
657,871 + RR42_RS23775 0.24 -2.1
657,871 + RR42_RS23775 0.24 -1.7
657,871 + RR42_RS23775 0.24 +0.8
657,872 - RR42_RS23775 0.24 +0.6
657,872 - RR42_RS23775 0.24 +1.0
657,872 - RR42_RS23775 0.24 -0.0
657,872 - RR42_RS23775 0.24 -2.1
657,872 - RR42_RS23775 0.24 -0.3
657,900 - RR42_RS23775 0.27 +0.9
657,929 - RR42_RS23775 0.29 +0.4
657,929 - RR42_RS23775 0.29 +0.6
657,929 - RR42_RS23775 0.29 -2.3
657,929 - RR42_RS23775 0.29 +1.0
657,929 - RR42_RS23775 0.29 +0.1
658,073 + RR42_RS23775 0.40 -0.2
658,186 - RR42_RS23775 0.49 +0.8
658,245 + RR42_RS23775 0.54 -0.4
658,313 + RR42_RS23775 0.60 +0.9
658,313 + RR42_RS23775 0.60 +0.1
658,313 + RR42_RS23775 0.60 -2.5
658,313 + RR42_RS23775 0.60 +0.3
658,314 - RR42_RS23775 0.60 -0.9
658,314 - RR42_RS23775 0.60 +1.9
658,314 - RR42_RS23775 0.60 +0.5
658,317 + RR42_RS23775 0.60 +0.1
658,317 + RR42_RS23775 0.60 +0.3
658,317 + RR42_RS23775 0.60 -1.7
658,317 + RR42_RS23775 0.60 +1.1
658,317 + RR42_RS23775 0.60 -3.5
658,317 + RR42_RS23775 0.60 +0.3
658,317 + RR42_RS23775 0.60 -2.1
658,317 + RR42_RS23775 0.60 +2.6
658,317 + RR42_RS23775 0.60 -0.7
658,318 - RR42_RS23775 0.60 -0.1
658,318 - RR42_RS23775 0.60 +0.3
658,318 - RR42_RS23775 0.60 -0.7
658,318 - RR42_RS23775 0.60 +1.7
658,318 - RR42_RS23775 0.60 -0.2
658,331 + RR42_RS23775 0.61 +0.4
658,425 + RR42_RS23775 0.69 +0.2
658,537 - RR42_RS23775 0.77 +0.8
658,613 + RR42_RS23775 0.84 +0.5
658,614 - RR42_RS23775 0.84 +1.1
658,717 + +0.2
658,718 - +1.3
658,756 + -1.2
658,757 + -0.4
658,758 - -3.0
658,758 - +0.4
658,758 - +1.1
658,768 + -1.7
658,768 + -1.1
658,814 + -1.3
658,849 + -0.1
658,849 + +1.1
658,850 - +2.3
658,850 - +0.3
658,850 - +0.1
658,850 - +0.8
658,909 + RR42_RS23780 0.10 -0.1
658,960 + RR42_RS23780 0.15 +0.1
659,117 - RR42_RS23780 0.32 +0.6
659,124 + RR42_RS23780 0.33 -1.3
659,125 - RR42_RS23780 0.33 -1.7
659,129 + RR42_RS23780 0.33 +1.2
659,129 + RR42_RS23780 0.33 +1.1
659,129 + RR42_RS23780 0.33 -0.8
659,130 - RR42_RS23780 0.34 -1.9
659,263 + RR42_RS23780 0.48 -1.0
659,304 + RR42_RS23780 0.52 +2.2
659,304 + RR42_RS23780 0.52 -0.5
659,305 - RR42_RS23780 0.52 -0.2
659,306 + RR42_RS23780 0.52 +0.4
659,307 - RR42_RS23780 0.52 -0.5
659,558 - RR42_RS23780 0.79 -0.8
659,656 - RR42_RS23780 0.90 +0.5
659,656 - RR42_RS23780 0.90 -0.7
659,656 - RR42_RS23780 0.90 +0.9
659,656 - RR42_RS23780 0.90 -0.1
659,656 - RR42_RS23780 0.90 -0.5
659,656 - RR42_RS23780 0.90 -1.6
659,656 - RR42_RS23780 0.90 +0.1
659,819 + +1.2
659,819 + -0.7
659,819 + +0.0
659,903 - -0.2
659,903 - +0.4
659,903 - -0.5
659,934 + +0.7
660,068 - +0.2
660,075 - +0.9
660,095 + RR42_RS23785 0.14 +1.9
660,190 + RR42_RS23785 0.50 -0.2
660,190 + RR42_RS23785 0.50 -2.1
660,191 - RR42_RS23785 0.51 -0.4
660,191 - RR42_RS23785 0.51 -0.3
660,191 - RR42_RS23785 0.51 -1.0
660,193 - RR42_RS23785 0.51 -1.3
660,215 + RR42_RS23785 0.60 +0.2
660,215 + RR42_RS23785 0.60 -0.9
660,216 - RR42_RS23785 0.60 -0.1
660,216 - RR42_RS23785 0.60 +0.1
660,317 + +0.2
660,320 + +0.4
660,321 - +1.1
660,329 - -1.9
660,330 + -2.3
660,330 + -1.1
660,331 - -1.3
660,331 - +1.4
660,380 + +0.1
660,381 - +0.3
660,381 - +0.7
660,426 + -1.1
660,426 + +3.7
660,533 + +0.3
660,534 - +1.2
660,534 - +0.5
660,536 + -1.7
660,536 + -0.4
660,536 + -0.5
660,537 - +0.4
660,547 - +0.1
660,589 - -0.9
660,589 - +0.3
660,678 + +0.2
660,678 + +0.5
660,678 + +0.4
660,678 + -0.0
660,679 - -2.0

Or see this region's nucleotide sequence