Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS23500

Experiment: R2A with D-Cycloserine 0.5 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS23490 and RR42_RS23495 are separated by 25 nucleotidesRR42_RS23495 and RR42_RS23500 are separated by 59 nucleotidesRR42_RS23500 and RR42_RS23505 are separated by 132 nucleotides RR42_RS23490: RR42_RS23490 - NADH oxidase, at 596,157 to 597,176 _RS23490 RR42_RS23495: RR42_RS23495 - benzene 1,2-dioxygenase, at 597,202 to 597,684 _RS23495 RR42_RS23500: RR42_RS23500 - benzene 1,2-dioxygenase, at 597,744 to 599,132 _RS23500 RR42_RS23505: RR42_RS23505 - catechol 1,2-dioxygenase, at 599,265 to 600,179 _RS23505 Position (kb) 597 598 599 600Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 596.752 kb on + strand, within RR42_RS23490at 596.752 kb on + strand, within RR42_RS23490at 596.752 kb on + strand, within RR42_RS23490at 596.752 kb on + strand, within RR42_RS23490at 596.752 kb on + strand, within RR42_RS23490at 596.753 kb on - strand, within RR42_RS23490at 596.984 kb on + strand, within RR42_RS23490at 596.985 kb on - strand, within RR42_RS23490at 596.986 kb on + strand, within RR42_RS23490at 596.987 kb on - strand, within RR42_RS23490at 597.169 kb on + strandat 597.169 kb on + strandat 597.169 kb on + strandat 597.169 kb on + strandat 597.212 kb on + strandat 597.212 kb on + strandat 597.212 kb on + strandat 597.212 kb on + strandat 597.213 kb on - strandat 597.213 kb on - strandat 597.213 kb on - strandat 597.236 kb on + strandat 597.257 kb on + strand, within RR42_RS23495at 597.303 kb on - strand, within RR42_RS23495at 597.326 kb on + strand, within RR42_RS23495at 597.327 kb on - strand, within RR42_RS23495at 597.327 kb on - strand, within RR42_RS23495at 597.599 kb on + strand, within RR42_RS23495at 597.818 kb on - strandat 598.045 kb on + strand, within RR42_RS23500at 598.102 kb on + strand, within RR42_RS23500at 598.102 kb on + strand, within RR42_RS23500at 598.339 kb on + strand, within RR42_RS23500at 598.425 kb on - strand, within RR42_RS23500at 598.425 kb on - strand, within RR42_RS23500at 598.438 kb on + strand, within RR42_RS23500at 598.514 kb on + strand, within RR42_RS23500at 598.516 kb on + strand, within RR42_RS23500at 598.516 kb on + strand, within RR42_RS23500at 598.517 kb on - strand, within RR42_RS23500at 598.517 kb on - strand, within RR42_RS23500at 598.795 kb on + strand, within RR42_RS23500at 598.796 kb on - strand, within RR42_RS23500at 598.796 kb on - strand, within RR42_RS23500at 598.918 kb on + strand, within RR42_RS23500at 598.919 kb on - strand, within RR42_RS23500at 598.927 kb on + strand, within RR42_RS23500at 598.927 kb on + strand, within RR42_RS23500at 598.928 kb on - strand, within RR42_RS23500at 598.931 kb on - strand, within RR42_RS23500at 598.931 kb on - strand, within RR42_RS23500at 598.969 kb on + strand, within RR42_RS23500at 598.969 kb on + strand, within RR42_RS23500at 599.120 kb on - strandat 599.120 kb on - strandat 599.267 kb on - strandat 599.603 kb on - strand, within RR42_RS23505at 599.603 kb on - strand, within RR42_RS23505at 599.704 kb on + strand, within RR42_RS23505at 599.704 kb on + strand, within RR42_RS23505at 599.704 kb on + strand, within RR42_RS23505at 599.705 kb on - strand, within RR42_RS23505at 599.869 kb on + strand, within RR42_RS23505at 599.869 kb on + strand, within RR42_RS23505at 599.869 kb on + strand, within RR42_RS23505at 599.870 kb on - strand, within RR42_RS23505at 599.870 kb on - strand, within RR42_RS23505at 599.870 kb on - strand, within RR42_RS23505at 599.870 kb on - strand, within RR42_RS23505at 599.870 kb on - strand, within RR42_RS23505at 599.870 kb on - strand, within RR42_RS23505at 599.870 kb on - strand, within RR42_RS23505at 599.870 kb on - strand, within RR42_RS23505at 600.010 kb on + strand, within RR42_RS23505

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with D-Cycloserine 0.5 mg/ml
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596,752 + RR42_RS23490 0.58 -0.0
596,752 + RR42_RS23490 0.58 +1.2
596,752 + RR42_RS23490 0.58 +0.8
596,752 + RR42_RS23490 0.58 +1.2
596,752 + RR42_RS23490 0.58 -0.9
596,753 - RR42_RS23490 0.58 +2.1
596,984 + RR42_RS23490 0.81 +1.3
596,985 - RR42_RS23490 0.81 +0.1
596,986 + RR42_RS23490 0.81 -0.2
596,987 - RR42_RS23490 0.81 +0.5
597,169 + +0.7
597,169 + -0.4
597,169 + +1.1
597,169 + -2.1
597,212 + +0.6
597,212 + +0.6
597,212 + +0.5
597,212 + -0.5
597,213 - +0.8
597,213 - -1.3
597,213 - +0.6
597,236 + -0.3
597,257 + RR42_RS23495 0.11 -0.0
597,303 - RR42_RS23495 0.21 +0.9
597,326 + RR42_RS23495 0.26 -0.1
597,327 - RR42_RS23495 0.26 +0.6
597,327 - RR42_RS23495 0.26 +0.5
597,599 + RR42_RS23495 0.82 +0.7
597,818 - -1.2
598,045 + RR42_RS23500 0.22 -0.3
598,102 + RR42_RS23500 0.26 -0.5
598,102 + RR42_RS23500 0.26 +0.1
598,339 + RR42_RS23500 0.43 -0.5
598,425 - RR42_RS23500 0.49 +1.1
598,425 - RR42_RS23500 0.49 -3.1
598,438 + RR42_RS23500 0.50 -1.7
598,514 + RR42_RS23500 0.55 +0.1
598,516 + RR42_RS23500 0.56 -1.6
598,516 + RR42_RS23500 0.56 -2.1
598,517 - RR42_RS23500 0.56 +0.4
598,517 - RR42_RS23500 0.56 +1.0
598,795 + RR42_RS23500 0.76 -1.8
598,796 - RR42_RS23500 0.76 -0.3
598,796 - RR42_RS23500 0.76 +0.6
598,918 + RR42_RS23500 0.85 -2.2
598,919 - RR42_RS23500 0.85 -0.2
598,927 + RR42_RS23500 0.85 +0.7
598,927 + RR42_RS23500 0.85 -1.7
598,928 - RR42_RS23500 0.85 -2.1
598,931 - RR42_RS23500 0.85 +1.1
598,931 - RR42_RS23500 0.85 +0.2
598,969 + RR42_RS23500 0.88 +1.1
598,969 + RR42_RS23500 0.88 -1.5
599,120 - -0.5
599,120 - +0.7
599,267 - +1.3
599,603 - RR42_RS23505 0.37 +0.9
599,603 - RR42_RS23505 0.37 -2.1
599,704 + RR42_RS23505 0.48 +0.3
599,704 + RR42_RS23505 0.48 -1.0
599,704 + RR42_RS23505 0.48 -2.9
599,705 - RR42_RS23505 0.48 -0.4
599,869 + RR42_RS23505 0.66 +0.2
599,869 + RR42_RS23505 0.66 +0.3
599,869 + RR42_RS23505 0.66 -2.1
599,870 - RR42_RS23505 0.66 +1.4
599,870 - RR42_RS23505 0.66 -0.6
599,870 - RR42_RS23505 0.66 -1.9
599,870 - RR42_RS23505 0.66 -0.8
599,870 - RR42_RS23505 0.66 +0.9
599,870 - RR42_RS23505 0.66 -0.0
599,870 - RR42_RS23505 0.66 +0.7
599,870 - RR42_RS23505 0.66 +0.5
600,010 + RR42_RS23505 0.81 +0.4

Or see this region's nucleotide sequence