Experiment: R2A with D-Cycloserine 0.5 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS23320 and RR42_RS23325 are separated by 288 nucleotides RR42_RS23325 and RR42_RS23330 are separated by 53 nucleotides RR42_RS23330 and RR42_RS23335 overlap by 9 nucleotides
RR42_RS23320: RR42_RS23320 - hypothetical protein, at 562,501 to 564,165
_RS23320
RR42_RS23325: RR42_RS23325 - class D beta-lactamase, at 564,454 to 565,239
_RS23325
RR42_RS23330: RR42_RS23330 - class A beta-lactamase, at 565,293 to 566,180
_RS23330
RR42_RS23335: RR42_RS23335 - hypothetical protein, at 566,172 to 566,552
_RS23335
Position (kb) 564
565
566 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 563.696 kb on + strand, within RR42_RS23320 at 563.697 kb on - strand, within RR42_RS23320 at 563.717 kb on + strand, within RR42_RS23320 at 563.718 kb on - strand, within RR42_RS23320 at 563.995 kb on - strand, within RR42_RS23320 at 564.257 kb on + strand at 564.369 kb on + strand at 564.369 kb on + strand at 564.667 kb on + strand, within RR42_RS23325 at 564.831 kb on + strand, within RR42_RS23325 at 564.968 kb on - strand, within RR42_RS23325 at 564.968 kb on - strand, within RR42_RS23325 at 565.596 kb on - strand, within RR42_RS23330 at 565.596 kb on - strand, within RR42_RS23330 at 565.695 kb on + strand, within RR42_RS23330 at 565.952 kb on + strand, within RR42_RS23330 at 565.952 kb on + strand, within RR42_RS23330 at 566.029 kb on - strand, within RR42_RS23330 at 566.174 kb on - strand at 566.178 kb on + strand at 566.179 kb on - strand at 566.179 kb on - strand at 566.179 kb on - strand at 566.179 kb on - strand at 566.179 kb on - strand at 566.224 kb on - strand, within RR42_RS23335
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with D-Cycloserine 0.5 mg/ml remove 563,696 + RR42_RS23320 0.72 -0.1 563,697 - RR42_RS23320 0.72 +0.7 563,717 + RR42_RS23320 0.73 +0.2 563,718 - RR42_RS23320 0.73 -0.0 563,995 - RR42_RS23320 0.90 +0.2 564,257 + +0.8 564,369 + +0.5 564,369 + +1.3 564,667 + RR42_RS23325 0.27 -1.3 564,831 + RR42_RS23325 0.48 -0.9 564,968 - RR42_RS23325 0.65 +0.3 564,968 - RR42_RS23325 0.65 +0.4 565,596 - RR42_RS23330 0.34 -1.9 565,596 - RR42_RS23330 0.34 -2.9 565,695 + RR42_RS23330 0.45 +1.1 565,952 + RR42_RS23330 0.74 +0.1 565,952 + RR42_RS23330 0.74 -0.3 566,029 - RR42_RS23330 0.83 +2.1 566,174 - -0.6 566,178 + +0.6 566,179 - -0.9 566,179 - +1.3 566,179 - +0.2 566,179 - +0.2 566,179 - +0.3 566,224 - RR42_RS23335 0.14 -0.0
Or see this region's nucleotide sequence