Experiment: R2A with D-Cycloserine 0.5 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS22785 and RR42_RS22790 are separated by 138 nucleotides RR42_RS22790 and RR42_RS22795 are separated by 66 nucleotides
RR42_RS22785: RR42_RS22785 - receptor, at 443,906 to 444,859
_RS22785
RR42_RS22790: RR42_RS22790 - MmgE/PrpD family protein, at 444,998 to 446,410
_RS22790
RR42_RS22795: RR42_RS22795 - hypothetical protein, at 446,477 to 447,442
_RS22795
Position (kb) 444
445
446
447 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 444.008 kb on + strand, within RR42_RS22785 at 444.011 kb on - strand, within RR42_RS22785 at 444.026 kb on - strand, within RR42_RS22785 at 444.160 kb on + strand, within RR42_RS22785 at 444.160 kb on + strand, within RR42_RS22785 at 444.161 kb on - strand, within RR42_RS22785 at 444.200 kb on + strand, within RR42_RS22785 at 444.201 kb on - strand, within RR42_RS22785 at 444.279 kb on + strand, within RR42_RS22785 at 444.279 kb on + strand, within RR42_RS22785 at 444.280 kb on - strand, within RR42_RS22785 at 444.329 kb on + strand, within RR42_RS22785 at 444.444 kb on - strand, within RR42_RS22785 at 444.444 kb on - strand, within RR42_RS22785 at 444.530 kb on + strand, within RR42_RS22785 at 444.601 kb on + strand, within RR42_RS22785 at 444.804 kb on + strand at 444.804 kb on + strand at 444.846 kb on - strand at 444.908 kb on + strand at 444.909 kb on - strand at 444.918 kb on + strand at 444.918 kb on + strand at 444.918 kb on + strand at 445.292 kb on + strand, within RR42_RS22790 at 445.293 kb on - strand, within RR42_RS22790 at 445.410 kb on - strand, within RR42_RS22790 at 445.604 kb on + strand, within RR42_RS22790 at 445.944 kb on - strand, within RR42_RS22790 at 446.107 kb on + strand, within RR42_RS22790 at 446.270 kb on + strand at 446.270 kb on + strand at 446.271 kb on - strand at 446.271 kb on - strand at 446.728 kb on + strand, within RR42_RS22795 at 446.728 kb on + strand, within RR42_RS22795 at 446.728 kb on + strand, within RR42_RS22795 at 446.729 kb on - strand, within RR42_RS22795 at 446.729 kb on - strand, within RR42_RS22795 at 446.729 kb on - strand, within RR42_RS22795 at 447.017 kb on + strand, within RR42_RS22795 at 447.017 kb on + strand, within RR42_RS22795 at 447.018 kb on - strand, within RR42_RS22795 at 447.230 kb on + strand, within RR42_RS22795 at 447.230 kb on + strand, within RR42_RS22795 at 447.231 kb on - strand, within RR42_RS22795 at 447.231 kb on - strand, within RR42_RS22795 at 447.231 kb on - strand, within RR42_RS22795 at 447.231 kb on - strand, within RR42_RS22795
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with D-Cycloserine 0.5 mg/ml remove 444,008 + RR42_RS22785 0.11 +0.0 444,011 - RR42_RS22785 0.11 -0.0 444,026 - RR42_RS22785 0.13 -1.8 444,160 + RR42_RS22785 0.27 -0.2 444,160 + RR42_RS22785 0.27 -3.6 444,161 - RR42_RS22785 0.27 -1.1 444,200 + RR42_RS22785 0.31 -1.0 444,201 - RR42_RS22785 0.31 +3.0 444,279 + RR42_RS22785 0.39 -0.3 444,279 + RR42_RS22785 0.39 -2.0 444,280 - RR42_RS22785 0.39 -0.7 444,329 + RR42_RS22785 0.44 +0.2 444,444 - RR42_RS22785 0.56 -1.2 444,444 - RR42_RS22785 0.56 -1.0 444,530 + RR42_RS22785 0.65 +2.2 444,601 + RR42_RS22785 0.73 -1.4 444,804 + -0.5 444,804 + -0.3 444,846 - -2.8 444,908 + -0.9 444,909 - +2.3 444,918 + +0.6 444,918 + +0.1 444,918 + +1.2 445,292 + RR42_RS22790 0.21 +0.4 445,293 - RR42_RS22790 0.21 -0.2 445,410 - RR42_RS22790 0.29 -1.6 445,604 + RR42_RS22790 0.43 +0.7 445,944 - RR42_RS22790 0.67 +0.8 446,107 + RR42_RS22790 0.78 +1.3 446,270 + -0.7 446,270 + -0.1 446,271 - -0.2 446,271 - -0.1 446,728 + RR42_RS22795 0.26 +0.6 446,728 + RR42_RS22795 0.26 -0.4 446,728 + RR42_RS22795 0.26 -2.5 446,729 - RR42_RS22795 0.26 +0.7 446,729 - RR42_RS22795 0.26 -0.2 446,729 - RR42_RS22795 0.26 +2.0 447,017 + RR42_RS22795 0.56 -0.7 447,017 + RR42_RS22795 0.56 -0.1 447,018 - RR42_RS22795 0.56 +0.5 447,230 + RR42_RS22795 0.78 -0.9 447,230 + RR42_RS22795 0.78 -2.5 447,231 - RR42_RS22795 0.78 -0.2 447,231 - RR42_RS22795 0.78 +0.5 447,231 - RR42_RS22795 0.78 +0.6 447,231 - RR42_RS22795 0.78 -1.2
Or see this region's nucleotide sequence