Experiment: R2A with D-Cycloserine 0.5 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS22305 and RR42_RS22310 are separated by 12 nucleotides RR42_RS22310 and RR42_RS22315 are separated by 202 nucleotides RR42_RS22315 and RR42_RS22320 are separated by 35 nucleotides
RR42_RS22305: RR42_RS22305 - histidine kinase, at 344,783 to 346,276
_RS22305
RR42_RS22310: RR42_RS22310 - LysR family transcriptional regulator, at 346,289 to 347,188
_RS22310
RR42_RS22315: RR42_RS22315 - LysR family transcriptional regulator, at 347,391 to 347,831
_RS22315
RR42_RS22320: RR42_RS22320 - MFS transporter, at 347,867 to 349,171
_RS22320
Position (kb) 346
347
348 Strain fitness (log2 ratio) -2
-1
0
1 at 345.607 kb on + strand, within RR42_RS22305 at 345.651 kb on - strand, within RR42_RS22305 at 345.708 kb on - strand, within RR42_RS22305 at 345.708 kb on - strand, within RR42_RS22305 at 346.220 kb on - strand at 346.220 kb on - strand at 346.363 kb on - strand at 346.381 kb on - strand, within RR42_RS22310 at 346.463 kb on - strand, within RR42_RS22310 at 346.528 kb on + strand, within RR42_RS22310 at 346.528 kb on + strand, within RR42_RS22310 at 346.529 kb on - strand, within RR42_RS22310 at 346.529 kb on - strand, within RR42_RS22310 at 346.529 kb on - strand, within RR42_RS22310 at 347.069 kb on - strand, within RR42_RS22310 at 347.069 kb on - strand, within RR42_RS22310 at 347.070 kb on + strand, within RR42_RS22310 at 347.070 kb on + strand, within RR42_RS22310 at 347.071 kb on - strand, within RR42_RS22310 at 347.071 kb on - strand, within RR42_RS22310 at 347.200 kb on + strand at 347.219 kb on + strand at 347.219 kb on + strand at 347.254 kb on - strand at 347.259 kb on + strand at 347.545 kb on - strand, within RR42_RS22315 at 347.653 kb on + strand, within RR42_RS22315 at 347.654 kb on - strand, within RR42_RS22315 at 347.654 kb on - strand, within RR42_RS22315 at 347.654 kb on - strand, within RR42_RS22315 at 347.654 kb on - strand, within RR42_RS22315 at 347.675 kb on + strand, within RR42_RS22315 at 347.784 kb on + strand, within RR42_RS22315 at 347.785 kb on - strand, within RR42_RS22315 at 347.922 kb on + strand at 347.922 kb on + strand at 347.923 kb on - strand at 347.923 kb on - strand at 347.923 kb on - strand at 347.923 kb on - strand at 347.923 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with D-Cycloserine 0.5 mg/ml remove 345,607 + RR42_RS22305 0.55 +1.4 345,651 - RR42_RS22305 0.58 -0.1 345,708 - RR42_RS22305 0.62 -0.6 345,708 - RR42_RS22305 0.62 +0.8 346,220 - +0.2 346,220 - -1.0 346,363 - +0.7 346,381 - RR42_RS22310 0.10 -0.7 346,463 - RR42_RS22310 0.19 -0.0 346,528 + RR42_RS22310 0.27 -1.2 346,528 + RR42_RS22310 0.27 +0.0 346,529 - RR42_RS22310 0.27 -0.8 346,529 - RR42_RS22310 0.27 -1.9 346,529 - RR42_RS22310 0.27 +0.2 347,069 - RR42_RS22310 0.87 -0.5 347,069 - RR42_RS22310 0.87 -2.5 347,070 + RR42_RS22310 0.87 -2.7 347,070 + RR42_RS22310 0.87 +1.0 347,071 - RR42_RS22310 0.87 -0.3 347,071 - RR42_RS22310 0.87 +0.3 347,200 + +0.5 347,219 + +0.2 347,219 + -0.2 347,254 - -0.0 347,259 + -0.3 347,545 - RR42_RS22315 0.35 -1.1 347,653 + RR42_RS22315 0.59 -1.7 347,654 - RR42_RS22315 0.60 -0.3 347,654 - RR42_RS22315 0.60 +1.5 347,654 - RR42_RS22315 0.60 -0.0 347,654 - RR42_RS22315 0.60 -0.6 347,675 + RR42_RS22315 0.64 +1.3 347,784 + RR42_RS22315 0.89 -0.2 347,785 - RR42_RS22315 0.89 +1.6 347,922 + -1.7 347,922 + -0.5 347,923 - -1.6 347,923 - +1.5 347,923 - -0.2 347,923 - -0.6 347,923 - -0.3
Or see this region's nucleotide sequence