Experiment: R2A with D-Cycloserine 0.5 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS21885 and RR42_RS21890 are separated by 36 nucleotides RR42_RS21890 and RR42_RS21895 are separated by 648 nucleotides
RR42_RS21885: RR42_RS21885 - RND transporter MFP subunit, at 237,026 to 238,192
_RS21885
RR42_RS21890: RR42_RS21890 - transporter, at 238,229 to 239,455
_RS21890
RR42_RS21895: RR42_RS21895 - hypothetical protein, at 240,104 to 240,790
_RS21895
Position (kb) 238
239
240 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 237.282 kb on + strand, within RR42_RS21885 at 237.283 kb on - strand, within RR42_RS21885 at 237.283 kb on - strand, within RR42_RS21885 at 237.283 kb on - strand, within RR42_RS21885 at 237.534 kb on + strand, within RR42_RS21885 at 237.534 kb on + strand, within RR42_RS21885 at 237.535 kb on - strand, within RR42_RS21885 at 237.783 kb on + strand, within RR42_RS21885 at 237.783 kb on + strand, within RR42_RS21885 at 237.783 kb on + strand, within RR42_RS21885 at 237.783 kb on + strand, within RR42_RS21885 at 237.783 kb on + strand, within RR42_RS21885 at 237.784 kb on - strand, within RR42_RS21885 at 237.784 kb on - strand, within RR42_RS21885 at 237.796 kb on - strand, within RR42_RS21885 at 237.796 kb on - strand, within RR42_RS21885 at 237.906 kb on + strand, within RR42_RS21885 at 238.137 kb on + strand at 238.154 kb on - strand at 238.208 kb on - strand at 238.208 kb on - strand at 238.266 kb on + strand at 238.266 kb on + strand at 238.267 kb on - strand at 238.267 kb on - strand at 238.374 kb on + strand, within RR42_RS21890 at 238.563 kb on + strand, within RR42_RS21890 at 238.563 kb on + strand, within RR42_RS21890 at 238.564 kb on - strand, within RR42_RS21890 at 238.899 kb on + strand, within RR42_RS21890 at 238.899 kb on + strand, within RR42_RS21890 at 238.971 kb on + strand, within RR42_RS21890 at 238.972 kb on - strand, within RR42_RS21890 at 239.107 kb on - strand, within RR42_RS21890 at 239.118 kb on + strand, within RR42_RS21890 at 239.118 kb on + strand, within RR42_RS21890 at 239.119 kb on - strand, within RR42_RS21890 at 239.341 kb on + strand at 239.341 kb on + strand at 239.342 kb on - strand at 239.342 kb on - strand at 239.344 kb on - strand at 239.344 kb on - strand at 239.344 kb on - strand at 239.344 kb on - strand at 239.344 kb on - strand at 239.578 kb on + strand at 239.672 kb on - strand at 239.834 kb on + strand at 239.835 kb on - strand at 239.839 kb on + strand at 239.840 kb on - strand at 239.893 kb on + strand at 239.926 kb on + strand at 239.927 kb on - strand at 239.931 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with D-Cycloserine 0.5 mg/ml remove 237,282 + RR42_RS21885 0.22 +0.7 237,283 - RR42_RS21885 0.22 -1.5 237,283 - RR42_RS21885 0.22 -2.1 237,283 - RR42_RS21885 0.22 -0.8 237,534 + RR42_RS21885 0.44 -2.1 237,534 + RR42_RS21885 0.44 +0.1 237,535 - RR42_RS21885 0.44 +1.4 237,783 + RR42_RS21885 0.65 +1.4 237,783 + RR42_RS21885 0.65 -0.8 237,783 + RR42_RS21885 0.65 +2.2 237,783 + RR42_RS21885 0.65 +0.7 237,783 + RR42_RS21885 0.65 +2.3 237,784 - RR42_RS21885 0.65 -1.2 237,784 - RR42_RS21885 0.65 -0.7 237,796 - RR42_RS21885 0.66 +1.7 237,796 - RR42_RS21885 0.66 -3.3 237,906 + RR42_RS21885 0.75 -0.1 238,137 + +0.9 238,154 - +1.0 238,208 - +0.2 238,208 - -3.8 238,266 + -0.5 238,266 + -1.6 238,267 - -2.5 238,267 - -0.1 238,374 + RR42_RS21890 0.12 -0.2 238,563 + RR42_RS21890 0.27 -0.2 238,563 + RR42_RS21890 0.27 -0.4 238,564 - RR42_RS21890 0.27 +1.1 238,899 + RR42_RS21890 0.55 -2.3 238,899 + RR42_RS21890 0.55 +1.2 238,971 + RR42_RS21890 0.60 +1.0 238,972 - RR42_RS21890 0.61 +0.5 239,107 - RR42_RS21890 0.72 +0.8 239,118 + RR42_RS21890 0.72 +0.7 239,118 + RR42_RS21890 0.72 -0.4 239,119 - RR42_RS21890 0.73 +0.2 239,341 + +1.7 239,341 + -0.8 239,342 - -0.4 239,342 - +0.6 239,344 - -0.5 239,344 - +0.4 239,344 - -1.9 239,344 - -0.6 239,344 - -1.3 239,578 + -1.8 239,672 - -0.2 239,834 + +1.2 239,835 - -0.1 239,839 + +0.5 239,840 - +0.0 239,893 + +1.4 239,926 + +0.1 239,927 - -0.8 239,931 - +0.4
Or see this region's nucleotide sequence