Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS21585

Experiment: R2A with D-Cycloserine 0.5 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS21580 and RR42_RS21585 are separated by 45 nucleotidesRR42_RS21585 and RR42_RS21590 are separated by 457 nucleotides RR42_RS21580: RR42_RS21580 - cysteine desulfurase, at 167,020 to 168,204 _RS21580 RR42_RS21585: RR42_RS21585 - membrane protein, at 168,250 to 169,857 _RS21585 RR42_RS21590: RR42_RS21590 - hypothetical protein, at 170,315 to 173,065 _RS21590 Position (kb) 168 169 170Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 167.264 kb on + strand, within RR42_RS21580at 167.468 kb on + strand, within RR42_RS21580at 167.468 kb on + strand, within RR42_RS21580at 167.469 kb on - strand, within RR42_RS21580at 167.469 kb on - strand, within RR42_RS21580at 167.531 kb on + strand, within RR42_RS21580at 167.943 kb on + strand, within RR42_RS21580at 167.943 kb on + strand, within RR42_RS21580at 167.943 kb on + strand, within RR42_RS21580at 167.944 kb on - strand, within RR42_RS21580at 167.944 kb on - strand, within RR42_RS21580at 168.035 kb on + strand, within RR42_RS21580at 168.035 kb on + strand, within RR42_RS21580at 168.036 kb on - strand, within RR42_RS21580at 168.036 kb on - strand, within RR42_RS21580at 168.036 kb on - strand, within RR42_RS21580at 168.062 kb on + strand, within RR42_RS21580at 168.152 kb on + strandat 168.153 kb on - strandat 168.153 kb on - strandat 168.153 kb on - strandat 168.153 kb on - strandat 168.251 kb on + strandat 168.251 kb on + strandat 168.251 kb on + strandat 168.251 kb on + strandat 168.251 kb on + strandat 168.251 kb on + strandat 168.394 kb on + strandat 168.561 kb on - strand, within RR42_RS21585at 168.722 kb on + strand, within RR42_RS21585at 168.740 kb on + strand, within RR42_RS21585at 168.915 kb on - strand, within RR42_RS21585at 168.932 kb on + strand, within RR42_RS21585at 168.966 kb on + strand, within RR42_RS21585at 168.967 kb on - strand, within RR42_RS21585at 169.017 kb on - strand, within RR42_RS21585at 169.173 kb on + strand, within RR42_RS21585at 169.175 kb on + strand, within RR42_RS21585at 169.176 kb on - strand, within RR42_RS21585at 169.176 kb on - strand, within RR42_RS21585at 169.176 kb on - strand, within RR42_RS21585at 169.176 kb on - strand, within RR42_RS21585at 169.176 kb on - strand, within RR42_RS21585at 169.454 kb on + strand, within RR42_RS21585at 169.454 kb on + strand, within RR42_RS21585at 169.454 kb on + strand, within RR42_RS21585at 169.454 kb on + strand, within RR42_RS21585at 169.454 kb on + strand, within RR42_RS21585at 169.454 kb on + strand, within RR42_RS21585at 169.455 kb on - strand, within RR42_RS21585at 169.535 kb on + strand, within RR42_RS21585at 169.863 kb on + strandat 169.864 kb on - strandat 169.984 kb on + strandat 169.985 kb on - strandat 169.985 kb on - strandat 169.985 kb on - strandat 169.985 kb on - strandat 169.985 kb on - strandat 169.985 kb on - strandat 169.985 kb on - strandat 169.985 kb on - strandat 169.985 kb on - strandat 169.985 kb on - strandat 169.985 kb on - strandat 170.141 kb on + strandat 170.142 kb on - strandat 170.236 kb on + strandat 170.237 kb on - strandat 170.237 kb on - strandat 170.238 kb on + strandat 170.238 kb on + strandat 170.238 kb on + strandat 170.238 kb on + strandat 170.239 kb on - strandat 170.239 kb on - strandat 170.239 kb on - strandat 170.239 kb on - strandat 170.239 kb on - strandat 170.239 kb on - strandat 170.239 kb on - strandat 170.239 kb on - strandat 170.239 kb on - strandat 170.239 kb on - strandat 170.239 kb on - strandat 170.239 kb on - strandat 170.464 kb on + strandat 170.464 kb on + strandat 170.579 kb on + strandat 170.606 kb on + strand, within RR42_RS21590at 170.690 kb on + strand, within RR42_RS21590at 170.742 kb on - strand, within RR42_RS21590at 170.829 kb on - strand, within RR42_RS21590

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with D-Cycloserine 0.5 mg/ml
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167,264 + RR42_RS21580 0.21 +0.9
167,468 + RR42_RS21580 0.38 -0.1
167,468 + RR42_RS21580 0.38 -0.7
167,469 - RR42_RS21580 0.38 +0.3
167,469 - RR42_RS21580 0.38 -2.0
167,531 + RR42_RS21580 0.43 +0.0
167,943 + RR42_RS21580 0.78 -1.3
167,943 + RR42_RS21580 0.78 -1.0
167,943 + RR42_RS21580 0.78 -0.2
167,944 - RR42_RS21580 0.78 -0.1
167,944 - RR42_RS21580 0.78 -1.0
168,035 + RR42_RS21580 0.86 -0.5
168,035 + RR42_RS21580 0.86 +0.3
168,036 - RR42_RS21580 0.86 +0.5
168,036 - RR42_RS21580 0.86 +0.2
168,036 - RR42_RS21580 0.86 -0.5
168,062 + RR42_RS21580 0.88 -1.3
168,152 + +0.3
168,153 - -1.3
168,153 - -0.1
168,153 - +0.9
168,153 - +1.8
168,251 + +0.0
168,251 + +0.1
168,251 + -2.5
168,251 + +1.0
168,251 + -1.3
168,251 + -0.5
168,394 + +0.4
168,561 - RR42_RS21585 0.19 -2.4
168,722 + RR42_RS21585 0.29 +0.3
168,740 + RR42_RS21585 0.30 -3.0
168,915 - RR42_RS21585 0.41 -0.6
168,932 + RR42_RS21585 0.42 -0.4
168,966 + RR42_RS21585 0.45 +0.9
168,967 - RR42_RS21585 0.45 +1.0
169,017 - RR42_RS21585 0.48 +0.1
169,173 + RR42_RS21585 0.57 +0.1
169,175 + RR42_RS21585 0.58 -2.0
169,176 - RR42_RS21585 0.58 -0.1
169,176 - RR42_RS21585 0.58 -1.7
169,176 - RR42_RS21585 0.58 -0.7
169,176 - RR42_RS21585 0.58 -3.3
169,176 - RR42_RS21585 0.58 -0.2
169,454 + RR42_RS21585 0.75 +1.6
169,454 + RR42_RS21585 0.75 -1.9
169,454 + RR42_RS21585 0.75 +1.5
169,454 + RR42_RS21585 0.75 -0.7
169,454 + RR42_RS21585 0.75 -1.5
169,454 + RR42_RS21585 0.75 +0.3
169,455 - RR42_RS21585 0.75 +0.9
169,535 + RR42_RS21585 0.80 -1.2
169,863 + -2.2
169,864 - -0.3
169,984 + -0.2
169,985 - -2.7
169,985 - -1.9
169,985 - +0.3
169,985 - -1.0
169,985 - -0.3
169,985 - -0.7
169,985 - -1.3
169,985 - -1.1
169,985 - -1.1
169,985 - +0.1
169,985 - -0.0
170,141 + -0.3
170,142 - +0.2
170,236 + -1.7
170,237 - +0.5
170,237 - -0.5
170,238 + -0.0
170,238 + -2.4
170,238 + +1.9
170,238 + +0.3
170,239 - -0.2
170,239 - -0.7
170,239 - -0.6
170,239 - -1.0
170,239 - -1.9
170,239 - +0.5
170,239 - +2.3
170,239 - -3.0
170,239 - -0.1
170,239 - +1.3
170,239 - -2.0
170,239 - -1.5
170,464 + +0.3
170,464 + -0.2
170,579 + -0.5
170,606 + RR42_RS21590 0.11 +3.3
170,690 + RR42_RS21590 0.14 -1.6
170,742 - RR42_RS21590 0.16 -1.0
170,829 - RR42_RS21590 0.19 -0.1

Or see this region's nucleotide sequence