Experiment: R2A with D-Cycloserine 0.5 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS21525 and RR42_RS21530 are separated by 47 nucleotides RR42_RS21530 and RR42_RS21535 are separated by 430 nucleotides
RR42_RS21525: RR42_RS21525 - hypothetical protein, at 156,713 to 157,810
_RS21525
RR42_RS21530: RR42_RS21530 - IclR family transcriptional regulator, at 157,858 to 158,706
_RS21530
RR42_RS21535: RR42_RS21535 - hypothetical protein, at 159,137 to 159,658
_RS21535
Position (kb) 157
158
159 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 157.046 kb on + strand, within RR42_RS21525 at 157.296 kb on + strand, within RR42_RS21525 at 157.297 kb on - strand, within RR42_RS21525 at 157.297 kb on - strand at 157.402 kb on + strand, within RR42_RS21525 at 157.402 kb on + strand, within RR42_RS21525 at 157.403 kb on - strand, within RR42_RS21525 at 157.403 kb on - strand, within RR42_RS21525 at 157.469 kb on + strand, within RR42_RS21525 at 157.470 kb on - strand, within RR42_RS21525 at 157.470 kb on - strand, within RR42_RS21525 at 157.750 kb on - strand at 157.750 kb on - strand at 157.793 kb on - strand at 157.939 kb on + strand at 157.940 kb on - strand at 158.054 kb on + strand, within RR42_RS21530 at 158.054 kb on + strand, within RR42_RS21530 at 158.054 kb on + strand, within RR42_RS21530 at 158.054 kb on + strand, within RR42_RS21530 at 158.054 kb on + strand, within RR42_RS21530 at 158.055 kb on - strand, within RR42_RS21530 at 158.055 kb on - strand, within RR42_RS21530 at 158.055 kb on - strand, within RR42_RS21530 at 158.055 kb on - strand, within RR42_RS21530 at 158.055 kb on - strand, within RR42_RS21530 at 158.210 kb on + strand, within RR42_RS21530 at 158.210 kb on + strand, within RR42_RS21530 at 158.280 kb on - strand, within RR42_RS21530 at 158.390 kb on + strand, within RR42_RS21530 at 158.390 kb on + strand, within RR42_RS21530 at 158.390 kb on + strand, within RR42_RS21530 at 158.390 kb on + strand, within RR42_RS21530 at 158.390 kb on + strand, within RR42_RS21530 at 158.390 kb on + strand, within RR42_RS21530 at 158.391 kb on - strand, within RR42_RS21530 at 158.391 kb on - strand, within RR42_RS21530 at 158.391 kb on - strand, within RR42_RS21530 at 158.475 kb on - strand, within RR42_RS21530 at 158.547 kb on + strand, within RR42_RS21530 at 158.748 kb on - strand at 158.906 kb on + strand at 158.906 kb on + strand at 158.906 kb on + strand at 158.907 kb on - strand at 158.907 kb on - strand at 158.927 kb on + strand at 158.928 kb on - strand at 158.928 kb on - strand at 159.642 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with D-Cycloserine 0.5 mg/ml remove 157,046 + RR42_RS21525 0.30 +0.1 157,296 + RR42_RS21525 0.53 +0.5 157,297 - RR42_RS21525 0.53 -0.1 157,297 - +0.3 157,402 + RR42_RS21525 0.63 +1.9 157,402 + RR42_RS21525 0.63 +0.1 157,403 - RR42_RS21525 0.63 -0.5 157,403 - RR42_RS21525 0.63 +0.4 157,469 + RR42_RS21525 0.69 +0.3 157,470 - RR42_RS21525 0.69 -0.5 157,470 - RR42_RS21525 0.69 -2.6 157,750 - -0.3 157,750 - +0.2 157,793 - -2.7 157,939 + +0.2 157,940 - +2.0 158,054 + RR42_RS21530 0.23 -0.3 158,054 + RR42_RS21530 0.23 -1.3 158,054 + RR42_RS21530 0.23 +0.5 158,054 + RR42_RS21530 0.23 +0.3 158,054 + RR42_RS21530 0.23 -0.2 158,055 - RR42_RS21530 0.23 +1.5 158,055 - RR42_RS21530 0.23 -0.1 158,055 - RR42_RS21530 0.23 -2.6 158,055 - RR42_RS21530 0.23 -0.0 158,055 - RR42_RS21530 0.23 +1.0 158,210 + RR42_RS21530 0.41 +0.4 158,210 + RR42_RS21530 0.41 -1.2 158,280 - RR42_RS21530 0.50 +0.7 158,390 + RR42_RS21530 0.63 +0.4 158,390 + RR42_RS21530 0.63 -0.9 158,390 + RR42_RS21530 0.63 -0.1 158,390 + RR42_RS21530 0.63 +2.0 158,390 + RR42_RS21530 0.63 +1.8 158,390 + RR42_RS21530 0.63 +0.9 158,391 - RR42_RS21530 0.63 +1.6 158,391 - RR42_RS21530 0.63 -0.1 158,391 - RR42_RS21530 0.63 +2.9 158,475 - RR42_RS21530 0.73 +0.1 158,547 + RR42_RS21530 0.81 +0.6 158,748 - +1.0 158,906 + -0.0 158,906 + +1.4 158,906 + -2.2 158,907 - +1.0 158,907 - -0.6 158,927 + +1.3 158,928 - -0.3 158,928 - +1.2 159,642 - +0.7
Or see this region's nucleotide sequence