Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS20480

Experiment: R2A with D-Cycloserine 0.5 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with D-Cycloserine 0.5 mg/ml
4,435,560	+		RR42_RS20475	0.18	+0.4
4,435,560	+		RR42_RS20475	0.18	+2.0
4,435,560	+		RR42_RS20475	0.18	-0.0
4,435,560	+		RR42_RS20475	0.18	+0.1
4,435,560	+		RR42_RS20475	0.18	+2.3
4,435,560	+		RR42_RS20475	0.18	-2.4
4,435,560	+		RR42_RS20475	0.18	+0.5
4,435,560	+		RR42_RS20475	0.18	+0.1
4,435,561	-		RR42_RS20475	0.18	-0.1
4,435,561	-		RR42_RS20475	0.18	-0.4
4,435,561	-		RR42_RS20475	0.18	-0.1
4,435,561	-		RR42_RS20475	0.18	-2.2
4,435,561	-		RR42_RS20475	0.18	-1.2
4,435,561	-		RR42_RS20475	0.18	-2.6
4,435,678	+		RR42_RS20475	0.28	-0.0
4,435,678	+		RR42_RS20475	0.28	-0.2
4,435,678	+		RR42_RS20475	0.28	-1.6
4,435,678	+		RR42_RS20475	0.28	-2.5
4,435,678	+		RR42_RS20475	0.28	-1.1
4,435,678	+		RR42_RS20475	0.28	-2.0
4,435,678	+		RR42_RS20475	0.28	-0.2
4,435,679	-		RR42_RS20475	0.29	+1.7
4,435,679	-		RR42_RS20475	0.29	+0.6
4,435,679	-		RR42_RS20475	0.29	+0.4
4,435,679	-		RR42_RS20475	0.29	+1.4
4,435,679	-		RR42_RS20475	0.29	-0.1
4,435,679	-		RR42_RS20475	0.29	+1.9
4,435,679	-		RR42_RS20475	0.29	+1.4
4,435,679	-		RR42_RS20475	0.29	-0.1
4,435,679	-		RR42_RS20475	0.29	-0.6
4,435,680	+		RR42_RS20475	0.29	-0.2
4,435,680	+		RR42_RS20475	0.29	-0.1
4,435,681	-		RR42_RS20475	0.29	+0.4
4,435,681	-		RR42_RS20475	0.29	+0.7
4,435,681	-		RR42_RS20475	0.29	-0.1
4,435,681	-		RR42_RS20475	0.29	+0.0
4,435,681	-		RR42_RS20475	0.29	-1.1
4,435,681	-		RR42_RS20475	0.29	+0.4
4,435,681	-		RR42_RS20475	0.29	+0.3
4,435,698	+		RR42_RS20475	0.30	+2.3
4,435,699	-		RR42_RS20475	0.30	+0.1
4,435,921	-		RR42_RS20475	0.49	-1.2
4,435,945	-		RR42_RS20475	0.51	-0.1
4,436,050	-		RR42_RS20475	0.60	-0.6
4,436,110	+		RR42_RS20475	0.65	+0.8
4,436,111	-		RR42_RS20475	0.65	-0.2
4,436,111	-		RR42_RS20475	0.65	+0.1
4,436,111	-		RR42_RS20475	0.65	+0.7
4,436,111	-		RR42_RS20475	0.65	+0.4
4,436,111	-		RR42_RS20475	0.65	-0.5
4,436,111	-		RR42_RS20475	0.65	-1.9
4,436,114	+		RR42_RS20475	0.66	-1.1
4,436,114	+		RR42_RS20475	0.66	+0.1
4,436,115	-		RR42_RS20475	0.66	+0.2
4,436,115	-		RR42_RS20475	0.66	-0.4
4,436,115	-		RR42_RS20475	0.66	-0.9
4,436,196	+		RR42_RS20475	0.73	-2.2
4,436,196	+		RR42_RS20475	0.73	-0.1
4,436,197	-		RR42_RS20475	0.73	+0.3
4,436,197	-		RR42_RS20475	0.73	+0.1
4,436,197	-		RR42_RS20475	0.73	+0.6
4,436,197	-		RR42_RS20475	0.73	+0.9
4,436,247	+		RR42_RS20475	0.77	+0.1
4,436,248	-		RR42_RS20475	0.77	+0.3
4,436,409	+				+2.1
4,436,452	-				+0.6
4,436,835	-		RR42_RS20480	0.28	-0.4
4,436,879	+		RR42_RS20480	0.32	+1.1
4,436,879	+		RR42_RS20480	0.32	+0.8
4,436,879	+		RR42_RS20480	0.32	-1.2
4,436,880	-		RR42_RS20480	0.32	+0.2
4,436,880	-		RR42_RS20480	0.32	-2.9
4,436,880	-		RR42_RS20480	0.32	+0.4
4,437,329	+		RR42_RS20480	0.71	-0.8
4,437,329	+		RR42_RS20480	0.71	-1.2
4,437,329	+		RR42_RS20480	0.71	-0.8
4,437,329	+		RR42_RS20480	0.71	-1.2
4,437,330	-		RR42_RS20480	0.71	+1.0
4,437,330	-		RR42_RS20480	0.71	+1.8
4,437,330	-		RR42_RS20480	0.71	+0.1
4,437,330	-		RR42_RS20480	0.71	-2.0
4,437,330	-		RR42_RS20480	0.71	-1.2
4,437,330	-		RR42_RS20480	0.71	-1.7
4,437,635	-				-2.0
4,437,641	+				+1.3
4,437,641	+				+0.5
4,437,651	+				-0.0
4,437,652	-				-1.2
4,437,652	-				-0.1
4,437,652	-				+1.8
4,437,652	-				-0.2
4,437,652	-				-0.7
4,437,652	-				+0.8
4,437,652	-				-0.4
4,437,652	-				+0.4
4,437,656	+				+0.4
4,437,656	+				-1.4
4,437,656	+				-0.5
4,437,657	-				+0.6
4,437,657	-				+1.4
4,437,687	+				+1.0
4,437,687	+				+0.4
4,437,687	+				+0.1
4,437,709	-				+1.6
4,437,766	+				-0.2
4,437,766	+				+0.3
4,437,766	+				+0.2
4,437,766	+				-0.1
4,437,766	+				-0.4
4,437,833	+		RR42_RS20485	0.19	-0.5
4,437,834	+		RR42_RS20485	0.19	-0.9
4,437,875	-		RR42_RS20485	0.29	+1.8
4,437,875	-		RR42_RS20485	0.29	+0.4
4,437,875	-		RR42_RS20485	0.29	+0.2
4,437,973	-		RR42_RS20485	0.53	+1.5
4,438,030	+		RR42_RS20485	0.67	-0.7
4,438,050	+		RR42_RS20485	0.72	-1.9
4,438,050	+		RR42_RS20485	0.72	-0.6
4,438,051	-		RR42_RS20485	0.73	-1.2
4,438,051	-		RR42_RS20485	0.73	-2.5
4,438,324	+				+0.1
4,438,324	+				-0.7
4,438,327	+				+1.3
4,438,359	+				+4.0
4,438,359	+				+1.2
4,438,359	+				+0.7
4,438,359	+				+0.4
4,438,359	+				-1.8
4,438,363	+				+0.1
4,438,363	+				-1.8
4,438,363	+				-1.2
4,438,363	+				-0.4
4,438,363	+				+0.6
4,438,363	+				-1.5
4,438,363	+				-0.2
4,438,363	+				-0.6
4,438,364	-				+0.3
4,438,365	+				-1.8
4,438,365	+				+0.6
4,438,365	+				-0.2
4,438,365	+				-0.2
4,438,365	+				-1.2
4,438,365	+				-0.7
4,438,365	+				+1.1
4,438,379	+				-2.3
4,438,379	+				-2.4
4,438,379	+				-0.2