Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS20355

Experiment: R2A with D-Cycloserine 0.5 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with D-Cycloserine 0.5 mg/ml
4,402,861	-		RR42_RS20345	0.88	-2.4
4,402,861	-		RR42_RS20345	0.88	-1.1
4,403,205	+		RR42_RS20350	0.12	+0.7
4,403,342	+		RR42_RS20350	0.31	-2.0
4,403,343	-		RR42_RS20350	0.31	-1.2
4,403,748	-		RR42_RS20350	0.89	+1.0
4,403,868	+				+0.1
4,403,868	+				-0.2
4,403,881	+				-1.1
4,403,881	+				+0.0
4,403,974	+				-2.5
4,403,974	+				+0.3
4,403,975	-				+0.7
4,403,980	+				+1.2
4,403,981	-				-0.1
4,403,981	-				+1.1
4,404,172	+				+2.0
4,404,172	+				-0.7
4,404,173	-				+0.4
4,404,909	+		RR42_RS20355	0.18	+1.8
4,405,078	+		RR42_RS20355	0.21	-1.6
4,405,157	-		RR42_RS20355	0.22	+0.2
4,405,172	+		RR42_RS20355	0.22	+0.6
4,405,173	-		RR42_RS20355	0.22	+2.4
4,405,250	-		RR42_RS20355	0.24	+1.1
4,405,368	+		RR42_RS20355	0.26	+0.7
4,405,710	-		RR42_RS20355	0.31	-1.2
4,405,710	-		RR42_RS20355	0.31	-0.3
4,405,938	-		RR42_RS20355	0.35	-0.9
4,406,002	+		RR42_RS20355	0.36	+0.3
4,406,053	+		RR42_RS20355	0.37	+0.2
4,406,053	+		RR42_RS20355	0.37	-0.6
4,406,054	-		RR42_RS20355	0.37	+0.6
4,406,218	+		RR42_RS20355	0.40	-1.4
4,406,258	-		RR42_RS20355	0.40	-0.1
4,406,342	-		RR42_RS20355	0.42	+0.1
4,406,413	+		RR42_RS20355	0.43	-0.9
4,406,414	-		RR42_RS20355	0.43	+0.6
4,406,461	+		RR42_RS20355	0.44	-0.7
4,406,461	+		RR42_RS20355	0.44	-2.3
4,406,461	+		RR42_RS20355	0.44	-1.6
4,406,461	+		RR42_RS20355	0.44	+0.8
4,406,461	+		RR42_RS20355	0.44	-3.6
4,406,461	+		RR42_RS20355	0.44	-1.9
4,406,461	+		RR42_RS20355	0.44	+0.7
4,406,461	+		RR42_RS20355	0.44	+1.6
4,406,462	-		RR42_RS20355	0.44	+1.2
4,406,462	-		RR42_RS20355	0.44	-1.4
4,406,462	-		RR42_RS20355	0.44	+0.5
4,406,462	-		RR42_RS20355	0.44	+0.2
4,406,488	-		RR42_RS20355	0.44	-0.2
4,406,488	-		RR42_RS20355	0.44	-0.3
4,406,730	+		RR42_RS20355	0.48	-0.4
4,406,881	+		RR42_RS20355	0.51	-2.5
4,407,249	-		RR42_RS20355	0.57	+0.4
4,407,249	-		RR42_RS20355	0.57	-1.8
4,407,319	+		RR42_RS20355	0.58	+0.2
4,407,319	+		RR42_RS20355	0.58	+1.6
4,407,319	+		RR42_RS20355	0.58	+0.7
4,407,319	+		RR42_RS20355	0.58	+0.0
4,407,320	-		RR42_RS20355	0.58	-0.0
4,407,346	+		RR42_RS20355	0.59	+0.5
4,407,347	-		RR42_RS20355	0.59	+0.3
4,407,409	+		RR42_RS20355	0.60	-0.6
4,407,409	+		RR42_RS20355	0.60	-1.1
4,407,410	-		RR42_RS20355	0.60	-1.0
4,407,410	-		RR42_RS20355	0.60	-1.7
4,407,410	-		RR42_RS20355	0.60	+1.4
4,407,566	+		RR42_RS20355	0.62	+0.4
4,407,566	+		RR42_RS20355	0.62	-0.2
4,407,567	-		RR42_RS20355	0.62	+1.3
4,407,567	-		RR42_RS20355	0.62	-0.2
4,407,569	-		RR42_RS20355	0.62	+0.1
4,407,569	-		RR42_RS20355	0.62	+0.6
4,407,800	+		RR42_RS20355	0.66	+0.2
4,407,801	-		RR42_RS20355	0.66	+1.0
4,407,968	-		RR42_RS20355	0.69	+1.1
4,408,222	+		RR42_RS20355	0.73	+0.8
4,408,223	-		RR42_RS20355	0.73	+1.4
4,408,223	-		RR42_RS20355	0.73	-2.3
4,408,223	-		RR42_RS20355	0.73	+0.2
4,408,955	+		RR42_RS20355	0.85	+1.2
4,408,955	+		RR42_RS20355	0.85	-2.1
4,408,956	-		RR42_RS20355	0.85	+1.4
4,408,956	-		RR42_RS20355	0.85	+0.9
4,409,051	+		RR42_RS20355	0.87	-1.2
4,409,052	-		RR42_RS20355	0.87	+1.2
4,409,052	-		RR42_RS20355	0.87	+2.5
4,409,084	-		RR42_RS20355	0.87	-0.4
4,409,084	-		RR42_RS20355	0.87	-1.6
4,409,084	-		RR42_RS20355	0.87	+0.1
4,409,446	+				-0.8
4,409,447	-				-0.4
4,409,464	+				+0.1
4,409,465	-				-0.3
4,410,083	+		RR42_RS20360	0.32	-0.3
4,410,107	+		RR42_RS20360	0.37	-0.4
4,410,512	+				+0.5
4,410,513	-				-0.3
4,410,521	+				+1.7
4,410,592	+				-0.4
4,410,720	+				+0.7