Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS19455

Experiment: R2A with D-Cycloserine 0.5 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with D-Cycloserine 0.5 mg/ml
4,201,895	+		RR42_RS19450	0.46	+0.7
4,201,895	+		RR42_RS19450	0.46	+1.8
4,201,896	-		RR42_RS19450	0.46	+1.0
4,201,896	-		RR42_RS19450	0.46	+1.1
4,201,896	-		RR42_RS19450	0.46	+0.0
4,202,009	+		RR42_RS19450	0.52	+0.1
4,202,034	-		RR42_RS19450	0.53	-0.8
4,202,034	-		RR42_RS19450	0.53	-0.5
4,202,216	-		RR42_RS19450	0.63	+1.0
4,202,216	-		RR42_RS19450	0.63	+0.1
4,202,271	+		RR42_RS19450	0.66	+1.6
4,202,778	+				+1.6
4,202,779	-				-2.4
4,202,779	-				+0.1
4,202,970	-		RR42_RS19455	0.13	+0.5
4,203,076	+		RR42_RS19455	0.32	-0.0
4,203,076	+		RR42_RS19455	0.32	-0.4
4,203,076	+		RR42_RS19455	0.32	+1.7
4,203,076	+		RR42_RS19455	0.32	-1.9
4,203,076	+		RR42_RS19455	0.32	+0.8
4,203,076	+		RR42_RS19455	0.32	+0.1
4,203,077	-		RR42_RS19455	0.32	+0.4
4,203,077	-		RR42_RS19455	0.32	-1.4
4,203,077	-		RR42_RS19455	0.32	-2.4
4,203,077	-		RR42_RS19455	0.32	-1.2
4,203,116	-		RR42_RS19455	0.38	-0.6
4,203,116	-		RR42_RS19455	0.38	+1.0
4,203,190	+		RR42_RS19455	0.51	-1.6
4,203,191	-		RR42_RS19455	0.51	+0.4
4,203,250	+		RR42_RS19455	0.62	-0.2
4,203,250	+		RR42_RS19455	0.62	-0.7
4,203,250	+		RR42_RS19455	0.62	+1.4
4,203,251	-		RR42_RS19455	0.62	+1.9
4,203,251	-		RR42_RS19455	0.62	-1.2
4,203,251	-		RR42_RS19455	0.62	+0.2
4,203,312	+		RR42_RS19455	0.72	-0.1
4,203,312	+		RR42_RS19455	0.72	+0.9
4,203,329	-		RR42_RS19455	0.75	+1.9
4,203,335	+		RR42_RS19455	0.76	-0.4
4,203,337	+		RR42_RS19455	0.76	+0.3
4,203,337	+		RR42_RS19455	0.76	-0.4
4,203,337	+		RR42_RS19455	0.76	+0.2
4,203,337	+		RR42_RS19455	0.76	+0.1
4,203,337	+		RR42_RS19455	0.76	+0.7
4,203,337	+		RR42_RS19455	0.76	+1.1
4,203,337	+		RR42_RS19455	0.76	-0.4
4,203,337	+		RR42_RS19455	0.76	-0.1
4,203,337	+		RR42_RS19455	0.76	+0.2
4,203,337	+		RR42_RS19455	0.76	-0.1
4,203,338	-		RR42_RS19455	0.77	-1.5
4,203,338	-		RR42_RS19455	0.77	-3.2
4,203,338	-		RR42_RS19455	0.77	-3.3
4,203,346	+		RR42_RS19455	0.78	-0.4
4,203,347	-		RR42_RS19455	0.78	+0.2
4,203,347	-		RR42_RS19455	0.78	-1.0
4,203,436	+				-0.3
4,203,436	+				+1.4
4,203,437	-				-0.3
4,203,437	-				-1.9
4,203,437	-				-1.2
4,203,437	-				-0.9
4,203,437	-				+1.3
4,203,437	-				-0.9
4,203,440	+				+1.1
4,203,440	+				-0.1
4,203,531	+				-0.3
4,203,531	+				+1.1
4,203,531	+				+0.7
4,203,531	+				+0.6
4,203,531	+				-0.6
4,203,531	+				+2.2
4,203,532	-				+1.2
4,203,532	-				+1.1
4,203,686	+				-0.2
4,203,686	+				+0.4
4,203,687	-				-1.1
4,203,697	-				-1.8
4,203,742	+				+0.3
4,203,742	+				+0.3
4,203,743	-				-1.8
4,203,743	-				-1.3
4,203,764	+				+0.1
4,203,807	-				-1.6
4,203,807	-				-1.0
4,203,807	-				-0.4
4,203,855	+				-3.5
4,203,855	+				+0.4
4,203,856	-				-2.2
4,203,856	-				-1.4
4,203,861	+				+1.4
4,203,861	+				-0.7
4,203,871	+				+0.5
4,203,871	+				+0.2
4,203,872	-				+0.3
4,203,872	-				+3.0
4,203,872	-				-1.6
4,204,110	+		RR42_RS19460	0.31	-1.3
4,204,273	+		RR42_RS19460	0.55	+1.7
4,204,274	-		RR42_RS19460	0.55	-2.2
4,204,274	-		RR42_RS19460	0.55	-1.4
4,204,335	+		RR42_RS19460	0.64	-1.7
4,204,335	+		RR42_RS19460	0.64	-3.9
4,204,336	-		RR42_RS19460	0.64	+0.1
4,204,405	-		RR42_RS19460	0.74	-0.2
4,204,405	-		RR42_RS19460	0.74	-2.5
4,204,428	+		RR42_RS19460	0.77	-0.3
4,204,429	-		RR42_RS19460	0.77	-2.1