Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS18520

Experiment: R2A with D-Cycloserine 0.5 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with D-Cycloserine 0.5 mg/ml
4,006,581	+				-0.3
4,006,582	-				+0.9
4,006,582	-				-0.9
4,006,612	+				+0.8
4,006,612	+				-0.0
4,006,613	-				-0.8
4,006,613	-				-1.0
4,006,613	-				-1.9
4,006,613	-				+1.1
4,006,613	-				-0.3
4,006,613	-				-1.3
4,006,616	+				-1.0
4,006,616	+				+1.3
4,006,616	+				-0.4
4,006,616	+				-0.1
4,006,616	+				-0.2
4,006,616	+				-0.8
4,006,616	+				+0.2
4,006,616	+				+0.1
4,006,616	+				-0.4
4,006,616	+				-0.1
4,006,617	-				-0.5
4,006,617	-				+1.8
4,006,876	+		RR42_RS18515	0.27	+0.7
4,006,876	+		RR42_RS18515	0.27	-3.2
4,006,876	+		RR42_RS18515	0.27	+0.4
4,006,876	+		RR42_RS18515	0.27	+0.2
4,006,885	+		RR42_RS18515	0.28	+2.4
4,006,886	-		RR42_RS18515	0.28	-0.2
4,006,981	+		RR42_RS18515	0.40	-1.6
4,006,982	-		RR42_RS18515	0.40	-0.2
4,007,120	-		RR42_RS18515	0.57	-0.1
4,007,297	-		RR42_RS18515	0.79	-1.3
4,007,380	+		RR42_RS18515	0.89	-2.4
4,007,380	+		RR42_RS18515	0.89	-0.0
4,007,380	+		RR42_RS18515	0.89	-0.7
4,007,380	+		RR42_RS18515	0.89	-1.1
4,007,380	+		RR42_RS18515	0.89	-0.3
4,007,380	+		RR42_RS18515	0.89	-0.7
4,007,381	-		RR42_RS18515	0.89	+0.4
4,007,381	-		RR42_RS18515	0.89	+0.6
4,007,381	-		RR42_RS18515	0.89	+0.1
4,007,381	-		RR42_RS18515	0.89	-0.4
4,007,381	-		RR42_RS18515	0.89	+0.9
4,007,381	-		RR42_RS18515	0.89	+0.6
4,007,522	-				-3.0
4,007,522	-				+0.3
4,007,522	-				-1.2
4,007,702	-		RR42_RS18520	0.27	+0.2
4,007,809	+		RR42_RS18520	0.43	-0.2
4,007,819	+		RR42_RS18520	0.45	-0.4
4,007,889	-		RR42_RS18520	0.55	-1.3
4,008,202	-				-1.0
4,008,203	+				+0.7
4,008,203	+				-0.2
4,008,203	+				+0.8
4,008,203	+				+0.1
4,008,204	-				-1.6
4,008,204	-				-1.5
4,008,204	-				+0.2
4,008,204	-				+0.4
4,008,296	+				+1.9
4,008,296	+				-2.5
4,008,296	+				+0.8
4,008,296	+				+0.3
4,008,296	+				+0.3
4,008,296	+				+0.2
4,008,297	-				+2.1
4,008,297	-				+1.0
4,008,297	-				-1.4
4,008,297	-				+1.3
4,008,297	-				-0.5
4,008,297	-				-0.3
4,008,297	-				-0.9
4,008,297	-				+0.4
4,008,327	+		RR42_RS18525	0.14	+0.6
4,008,327	+		RR42_RS18525	0.14	-0.6
4,008,327	+		RR42_RS18525	0.14	-0.4
4,008,328	-		RR42_RS18525	0.14	-0.5
4,008,328	-		RR42_RS18525	0.14	-1.5
4,008,488	+		RR42_RS18525	0.68	+0.5
4,008,488	+		RR42_RS18525	0.68	-0.3
4,008,488	+		RR42_RS18525	0.68	-0.3
4,008,488	+		RR42_RS18525	0.68	-1.6
4,008,489	-		RR42_RS18525	0.69	-0.3
4,008,489	-		RR42_RS18525	0.69	+3.2
4,008,671	-				+0.3
4,008,712	+				-1.3
4,008,712	+				+0.4
4,008,712	+				+1.1
4,008,712	+				-0.2
4,008,713	-				-0.3
4,008,713	-				-0.4
4,008,713	-				-2.6
4,008,713	-				+0.1
4,008,713	-				-2.2
4,008,737	+				+2.0
4,008,781	+				+1.1
4,008,781	+				+0.7
4,008,782	-				-1.2
4,008,782	-				-2.1
4,008,782	-				-0.0
4,009,041	-		RR42_RS18530	0.22	-0.8
4,009,069	+		RR42_RS18530	0.24	-1.3