Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS18295

Experiment: R2A with D-Cycloserine 0.5 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with D-Cycloserine 0.5 mg/ml
3,962,277	+		RR42_RS18290	0.39	+0.2
3,962,277	+		RR42_RS18290	0.39	-0.2
3,962,277	+		RR42_RS18290	0.39	-0.0
3,962,278	-		RR42_RS18290	0.39	-0.3
3,962,278	-		RR42_RS18290	0.39	+2.3
3,962,289	+		RR42_RS18290	0.41	-0.3
3,962,289	+		RR42_RS18290	0.41	-0.8
3,962,290	-		RR42_RS18290	0.41	+0.3
3,962,290	-		RR42_RS18290	0.41	+1.5
3,962,322	+		RR42_RS18290	0.45	+1.0
3,962,457	+		RR42_RS18290	0.64	-2.5
3,962,457	+		RR42_RS18290	0.64	-1.7
3,962,457	+		RR42_RS18290	0.64	-0.2
3,962,458	-		RR42_RS18290	0.64	+1.3
3,962,458	-		RR42_RS18290	0.64	+0.6
3,962,619	+		RR42_RS18290	0.86	-1.0
3,962,626	-		RR42_RS18290	0.87	-1.5
3,962,626	-		RR42_RS18290	0.87	-1.3
3,962,626	-		RR42_RS18290	0.87	+0.9
3,962,644	+		RR42_RS18290	0.89	-0.0
3,962,644	+		RR42_RS18290	0.89	-0.9
3,962,645	-		RR42_RS18290	0.90	+1.1
3,962,645	-		RR42_RS18290	0.90	+0.0
3,962,645	-		RR42_RS18290	0.90	-1.7
3,962,666	+				-0.5
3,962,666	+				-0.0
3,962,666	+				-0.2
3,962,666	+				-0.9
3,962,667	-				-0.5
3,962,667	-				+0.3
3,962,667	-				-0.8
3,962,668	+				-0.7
3,962,669	-				-1.5
3,962,881	-				-1.5
3,963,144	+				-0.1
3,963,144	+				-0.9
3,963,365	+		RR42_RS18295	0.12	-0.2
3,963,555	-		RR42_RS18295	0.25	-3.3
3,963,578	+		RR42_RS18295	0.26	-2.2
3,963,579	-		RR42_RS18295	0.26	-3.0
3,963,579	-		RR42_RS18295	0.26	-2.2
3,963,579	-		RR42_RS18295	0.26	-1.0
3,963,579	-		RR42_RS18295	0.26	-2.5
3,963,579	-		RR42_RS18295	0.26	-1.9
3,963,580	+		RR42_RS18295	0.26	-2.0
3,963,580	+		RR42_RS18295	0.26	+0.6
3,963,580	+		RR42_RS18295	0.26	+1.6
3,963,581	-		RR42_RS18295	0.26	-1.0
3,963,581	-		RR42_RS18295	0.26	-0.5
3,963,692	+		RR42_RS18295	0.34	+0.2
3,963,692	+		RR42_RS18295	0.34	-1.7
3,963,827	+		RR42_RS18295	0.42	-1.0
3,963,851	+		RR42_RS18295	0.44	+0.3
3,963,881	+		RR42_RS18295	0.46	+1.3
3,963,881	+		RR42_RS18295	0.46	-1.8
3,963,882	-		RR42_RS18295	0.46	-2.4
3,963,882	-		RR42_RS18295	0.46	-1.9
3,963,882	-		RR42_RS18295	0.46	-2.2
3,963,962	+		RR42_RS18295	0.51	-3.5
3,963,995	+		RR42_RS18295	0.54	-3.0
3,963,995	+		RR42_RS18295	0.54	-1.0
3,963,995	+		RR42_RS18295	0.54	+0.4
3,963,996	-		RR42_RS18295	0.54	-2.5
3,963,996	-		RR42_RS18295	0.54	-2.5
3,963,996	-		RR42_RS18295	0.54	-3.0
3,963,996	-		RR42_RS18295	0.54	-0.6
3,963,996	-		RR42_RS18295	0.54	-2.2
3,964,001	+		RR42_RS18295	0.54	+1.3
3,964,001	+		RR42_RS18295	0.54	-3.7
3,964,001	+		RR42_RS18295	0.54	+0.2
3,964,001	+		RR42_RS18295	0.54	-2.3
3,964,002	-		RR42_RS18295	0.54	-3.6
3,964,002	-		RR42_RS18295	0.54	+0.1
3,964,002	-		RR42_RS18295	0.54	-1.9
3,964,002	-		RR42_RS18295	0.54	-0.7
3,964,002	-		RR42_RS18295	0.54	-1.8
3,964,007	+		RR42_RS18295	0.54	-1.6
3,964,310	+		RR42_RS18295	0.74	+0.3
3,964,310	+		RR42_RS18295	0.74	-1.5
3,964,310	+		RR42_RS18295	0.74	-3.1
3,964,310	+		RR42_RS18295	0.74	-3.4
3,964,311	-		RR42_RS18295	0.74	-0.6
3,964,479	-		RR42_RS18295	0.85	-1.3
3,964,496	+		RR42_RS18295	0.87	-2.6
3,964,497	-		RR42_RS18295	0.87	-0.6
3,964,568	+				-0.3
3,964,568	+				-0.2
3,964,569	-				+0.3
3,964,569	-				-1.2
3,964,569	-				-1.2
3,964,569	-				-2.3
3,964,694	-				-2.1
3,964,697	+				+0.6
3,964,697	+				+1.8
3,964,697	+				+1.3
3,964,697	+				-1.7
3,964,697	+				-0.1
3,964,697	+				-1.8
3,964,697	+				+0.1
3,964,698	-				-1.8
3,964,698	-				+0.8
3,964,698	-				-2.5
3,964,698	-				-0.7
3,964,703	-				-3.4
3,964,745	+				-2.2
3,964,746	-				-2.0
3,964,746	-				-1.1
3,964,761	-				-1.8
3,964,861	+		RR42_RS18300	0.24	-1.1
3,964,861	+		RR42_RS18300	0.24	-2.5
3,964,861	+		RR42_RS18300	0.24	-3.0
3,964,861	+		RR42_RS18300	0.24	-1.3
3,964,861	+		RR42_RS18300	0.24	-1.0
3,964,862	-		RR42_RS18300	0.24	-1.2
3,964,862	-		RR42_RS18300	0.24	-0.4
3,965,103	-		RR42_RS18300	0.66	-2.4