Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS18265

Experiment: R2A with D-Cycloserine 0.5 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with D-Cycloserine 0.5 mg/ml
3,957,161	+		RR42_RS18255	0.82	-0.6
3,957,161	+		RR42_RS18255	0.82	-0.3
3,957,162	-		RR42_RS18255	0.82	-0.3
3,957,162	-		RR42_RS18255	0.82	-0.8
3,957,409	+		RR42_RS18260	0.11	-0.3
3,957,409	+		RR42_RS18260	0.11	-0.1
3,957,409	+		RR42_RS18260	0.11	+1.3
3,957,410	-		RR42_RS18260	0.11	+0.2
3,957,410	-		RR42_RS18260	0.11	+0.3
3,957,410	-		RR42_RS18260	0.11	+0.6
3,957,410	-		RR42_RS18260	0.11	+3.3
3,957,410	-		RR42_RS18260	0.11	-1.4
3,957,588	+		RR42_RS18260	0.51	+0.4
3,957,589	-		RR42_RS18260	0.51	+0.7
3,957,589	-		RR42_RS18260	0.51	-2.0
3,957,589	-		RR42_RS18260	0.51	+2.2
3,957,594	+		RR42_RS18260	0.52	-0.0
3,957,594	+		RR42_RS18260	0.52	-0.1
3,957,595	-		RR42_RS18260	0.52	+1.7
3,957,700	+		RR42_RS18260	0.76	-0.0
3,957,700	+		RR42_RS18260	0.76	+1.7
3,957,700	+		RR42_RS18260	0.76	-1.7
3,957,700	+		RR42_RS18260	0.76	+1.5
3,957,700	+		RR42_RS18260	0.76	-1.3
3,957,700	+		RR42_RS18260	0.76	-0.9
3,957,701	-		RR42_RS18260	0.76	+0.0
3,957,701	-		RR42_RS18260	0.76	-0.2
3,957,701	-		RR42_RS18260	0.76	-0.3
3,957,701	-		RR42_RS18260	0.76	-2.3
3,957,701	-		RR42_RS18260	0.76	-1.5
3,957,701	-		RR42_RS18260	0.76	-2.2
3,957,701	-		RR42_RS18260	0.76	-0.9
3,957,701	-		RR42_RS18260	0.76	+0.2
3,957,701	-		RR42_RS18260	0.76	+0.3
3,957,701	-		RR42_RS18260	0.76	+0.0
3,957,825	+				+1.0
3,957,825	+				+1.1
3,957,825	+				-0.4
3,957,826	-				-1.2
3,957,826	-				-0.3
3,957,831	+				-0.3
3,957,831	+				-1.0
3,957,831	+				+0.3
3,957,831	+				-0.6
3,957,831	+				+0.5
3,957,832	-				-0.7
3,957,832	-				+0.3
3,957,832	-				+0.5
3,957,843	+				-2.2
3,957,844	-				+1.6
3,957,844	-				-1.1
3,957,844	-				-0.5
3,957,844	-				-0.5
3,957,844	-				+0.9
3,957,970	+				-0.3
3,957,971	-				-0.3
3,957,971	-				+0.5
3,957,988	+				+2.3
3,957,988	+				+0.6
3,957,989	-				-0.5
3,958,089	+		RR42_RS18265	0.17	-1.5
3,958,089	+		RR42_RS18265	0.17	+0.7
3,958,089	+		RR42_RS18265	0.17	+0.7
3,958,089	+		RR42_RS18265	0.17	+0.1
3,958,089	+		RR42_RS18265	0.17	-0.7
3,958,090	-		RR42_RS18265	0.17	+0.7
3,958,090	-		RR42_RS18265	0.17	-1.7
3,958,093	+		RR42_RS18265	0.18	-3.3
3,958,183	+		RR42_RS18265	0.24	-0.4
3,958,184	-		RR42_RS18265	0.25	+0.8
3,958,269	+		RR42_RS18265	0.31	-1.4
3,958,269	+		RR42_RS18265	0.31	-0.4
3,958,270	-		RR42_RS18265	0.31	+0.8
3,958,270	-		RR42_RS18265	0.31	-0.3
3,958,276	+		RR42_RS18265	0.32	-2.5
3,958,282	+		RR42_RS18265	0.32	-0.6
3,958,293	+		RR42_RS18265	0.33	-0.9
3,958,294	-		RR42_RS18265	0.33	+0.1
3,958,294	-		RR42_RS18265	0.33	-0.6
3,958,315	+		RR42_RS18265	0.35	-1.6
3,958,316	-		RR42_RS18265	0.35	-0.7
3,958,316	-		RR42_RS18265	0.35	-0.5
3,958,316	-		RR42_RS18265	0.35	+0.6
3,958,429	+		RR42_RS18265	0.43	-0.7
3,958,429	+		RR42_RS18265	0.43	+0.7
3,958,429	+		RR42_RS18265	0.43	+0.3
3,958,429	+		RR42_RS18265	0.43	-0.7
3,958,429	+		RR42_RS18265	0.43	-1.8
3,958,429	+		RR42_RS18265	0.43	+0.5
3,958,429	+		RR42_RS18265	0.43	-0.4
3,958,429	+		RR42_RS18265	0.43	+2.2
3,958,429	+		RR42_RS18265	0.43	+1.3
3,958,429	+		RR42_RS18265	0.43	+3.1
3,958,429	+		RR42_RS18265	0.43	-2.2
3,958,430	-		RR42_RS18265	0.43	+0.2
3,958,430	-		RR42_RS18265	0.43	-0.5
3,958,430	-		RR42_RS18265	0.43	-1.1
3,958,430	-		RR42_RS18265	0.43	-0.7
3,958,430	-		RR42_RS18265	0.43	-1.7
3,958,430	-		RR42_RS18265	0.43	+0.7
3,958,430	-		RR42_RS18265	0.43	+0.3
3,958,430	-		RR42_RS18265	0.43	-1.0
3,958,430	-		RR42_RS18265	0.43	+2.1
3,958,576	-		RR42_RS18265	0.55	-3.1
3,958,579	+		RR42_RS18265	0.55	-1.0
3,958,667	-		RR42_RS18265	0.62	+0.0
3,958,734	+		RR42_RS18265	0.67	-0.0
3,958,942	+		RR42_RS18265	0.83	-0.6
3,958,942	+		RR42_RS18265	0.83	+0.6
3,958,943	-		RR42_RS18265	0.83	-1.5
3,959,053	+				+1.5
3,959,053	+				-0.2
3,959,054	-				+0.4
3,959,103	+				-0.7
3,959,511	+		RR42_RS18270	0.24	+0.6
3,959,511	+		RR42_RS18270	0.24	+2.4
3,959,511	+		RR42_RS18270	0.24	-0.4
3,959,515	-		RR42_RS18270	0.24	+1.4
3,959,876	+		RR42_RS18270	0.55	+1.8
3,959,877	-		RR42_RS18270	0.55	-0.7
3,959,933	+		RR42_RS18270	0.60	-2.4
3,960,008	+		RR42_RS18270	0.66	+1.6