Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS17485

Experiment: R2A with D-Cycloserine 0.5 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with D-Cycloserine 0.5 mg/ml
3,783,323	+		RR42_RS17475	0.51	-0.0
3,783,323	+		RR42_RS17475	0.51	-0.1
3,783,323	+		RR42_RS17475	0.51	+0.7
3,783,323	+		RR42_RS17475	0.51	-0.4
3,783,323	+		RR42_RS17475	0.51	-1.5
3,783,323	+		RR42_RS17475	0.51	-0.5
3,783,323	+		RR42_RS17475	0.51	+1.2
3,783,323	+		RR42_RS17475	0.51	-2.3
3,783,323	+		RR42_RS17475	0.51	-0.7
3,783,324	-		RR42_RS17475	0.51	-1.5
3,783,324	-		RR42_RS17475	0.51	+0.3
3,783,324	-		RR42_RS17475	0.51	-0.6
3,783,324	-		RR42_RS17475	0.51	-2.5
3,783,352	+		RR42_RS17475	0.54	+1.4
3,783,353	-		RR42_RS17475	0.54	-2.6
3,783,353	-		RR42_RS17475	0.54	+0.4
3,783,353	-		RR42_RS17475	0.54	+3.2
3,783,353	-				+2.8
3,783,353	-		RR42_RS17475	0.54	-1.0
3,783,430	+		RR42_RS17475	0.63	+0.6
3,783,430	+		RR42_RS17475	0.63	+1.2
3,783,433	+		RR42_RS17475	0.63	-0.8
3,783,434	-		RR42_RS17475	0.63	-0.4
3,783,658	+		RR42_RS17475	0.88	-2.4
3,783,658	+		RR42_RS17475	0.88	-0.2
3,783,658	+		RR42_RS17475	0.88	+0.1
3,783,659	-		RR42_RS17475	0.88	-0.2
3,783,659	-		RR42_RS17475	0.88	+0.0
3,783,659	-		RR42_RS17475	0.88	-0.6
3,783,659	-		RR42_RS17475	0.88	+0.5
3,783,659	-		RR42_RS17475	0.88	+0.9
3,783,659	-		RR42_RS17475	0.88	-0.9
3,783,659	-		RR42_RS17475	0.88	-1.9
3,783,659	-		RR42_RS17475	0.88	-0.4
3,783,929	+		RR42_RS17480	0.39	+1.9
3,783,930	-		RR42_RS17480	0.40	+1.2
3,784,221	+				+0.7
3,784,221	+				+0.5
3,784,221	+				+1.3
3,784,221	+				-0.7
3,784,222	-				+0.0
3,784,222	-				+0.8
3,784,222	-				+0.2
3,784,222	-				-1.4
3,784,222	-				+1.1
3,784,222	-				-2.5
3,784,249	+				+0.2
3,784,250	-				-0.4
3,784,342	-				-1.0
3,784,342	-				-1.6
3,784,343	+				-1.1
3,784,392	+		RR42_RS17485	0.12	-1.4
3,784,392	+		RR42_RS17485	0.12	-0.3
3,784,392	+		RR42_RS17485	0.12	+1.0
3,784,392	+		RR42_RS17485	0.12	+0.7
3,784,393	-		RR42_RS17485	0.12	-1.1
3,784,394	+		RR42_RS17485	0.12	+0.1
3,784,394	+		RR42_RS17485	0.12	-0.9
3,784,395	-		RR42_RS17485	0.12	-2.0
3,784,457	+		RR42_RS17485	0.20	-3.2
3,784,552	+		RR42_RS17485	0.31	+0.2
3,784,553	-		RR42_RS17485	0.31	+0.7
3,784,556	+		RR42_RS17485	0.32	+0.7
3,784,556	+		RR42_RS17485	0.32	-2.6
3,784,556	+		RR42_RS17485	0.32	+0.7
3,784,557	-		RR42_RS17485	0.32	-0.2
3,784,557	-		RR42_RS17485	0.32	-1.7
3,784,557	-		RR42_RS17485	0.32	-0.8
3,784,557	-		RR42_RS17485	0.32	+0.2
3,784,557	-		RR42_RS17485	0.32	-0.8
3,784,557	-		RR42_RS17485	0.32	-1.1
3,784,559	+		RR42_RS17485	0.32	+2.3
3,784,559	+		RR42_RS17485	0.32	-0.0
3,784,559	+		RR42_RS17485	0.32	-2.0
3,784,560	-		RR42_RS17485	0.32	-0.3
3,784,560	-		RR42_RS17485	0.32	+0.5
3,784,560	-		RR42_RS17485	0.32	-2.6
3,784,560	-		RR42_RS17485	0.32	+0.0
3,784,560	-		RR42_RS17485	0.32	-1.7
3,784,632	-		RR42_RS17485	0.41	-0.0
3,784,662	-		RR42_RS17485	0.45	-1.4
3,784,673	+		RR42_RS17485	0.46	-0.2
3,784,674	-		RR42_RS17485	0.46	-0.6
3,784,700	+		RR42_RS17485	0.50	+0.4
3,784,700	+		RR42_RS17485	0.50	+1.8
3,784,700	+		RR42_RS17485	0.50	-2.3
3,784,700	+		RR42_RS17485	0.50	+0.6
3,784,700	+		RR42_RS17485	0.50	-1.1
3,784,700	+		RR42_RS17485	0.50	+0.5
3,784,700	+		RR42_RS17485	0.50	-1.1
3,784,701	-		RR42_RS17485	0.50	-1.1
3,784,701	-		RR42_RS17485	0.50	-0.4
3,784,701	-		RR42_RS17485	0.50	-0.0
3,784,701	-		RR42_RS17485	0.50	+0.7
3,784,701	-		RR42_RS17485	0.50	-1.7
3,784,703	+		RR42_RS17485	0.50	+0.8
3,784,703	+		RR42_RS17485	0.50	+2.8
3,784,703	+		RR42_RS17485	0.50	-1.4
3,784,703	+		RR42_RS17485	0.50	-1.0
3,784,704	-		RR42_RS17485	0.50	-1.5
3,784,704	-		RR42_RS17485	0.50	+0.9
3,784,704	-		RR42_RS17485	0.50	-1.1
3,784,704	-		RR42_RS17485	0.50	-0.2
3,784,724	+		RR42_RS17485	0.53	+0.2
3,784,725	-		RR42_RS17485	0.53	+1.0
3,784,772	+		RR42_RS17485	0.58	-0.4
3,784,772	+		RR42_RS17485	0.58	-1.0
3,784,845	+		RR42_RS17485	0.67	+0.4
3,784,853	+		RR42_RS17485	0.68	-2.2
3,784,854	-		RR42_RS17485	0.69	-0.3
3,784,935	-		RR42_RS17485	0.78	+0.0
3,785,113	+				-2.5
3,785,114	-				-2.0
3,785,256	-				-1.5
3,785,256	-				-2.1
3,785,278	+				-1.1
3,785,383	+				-0.8
3,785,383	+				-0.2
3,785,383	+				-0.3
3,785,383	+				-0.6
3,785,383	+				-0.4
3,785,384	-				-0.8
3,785,384	-				-0.2
3,785,384	-				+0.2
3,785,384	-				-0.5
3,785,399	+				+0.7
3,785,399	+				+0.1
3,785,399	+				+1.1
3,785,494	+				+0.2
3,785,494	+				+0.1
3,785,494	+				+0.8
3,785,558	+				-3.0
3,785,559	-				+0.6
3,785,719	+				+0.7
3,785,720	-				+0.1
3,785,791	+		RR42_RS17490	0.13	-0.6
3,786,066	-		RR42_RS17490	0.38	+0.8
3,786,086	-		RR42_RS17490	0.39	+1.6