Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS17320

Experiment: R2A with D-Cycloserine 0.5 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS17315 and RR42_RS17320 are separated by 164 nucleotidesRR42_RS17320 and RR42_RS17325 overlap by 4 nucleotidesRR42_RS17325 and RR42_RS17330 are separated by 36 nucleotides RR42_RS17315: RR42_RS17315 - D-lactate dehydrogenase, iron-sulfur subunit GlcF (EC 1.1.99.6) (from data), at 3,749,649 to 3,750,914 _RS17315 RR42_RS17320: RR42_RS17320 - murein hydrolase transporter LrgA, at 3,751,079 to 3,751,465 _RS17320 RR42_RS17325: RR42_RS17325 - membrane protein, at 3,751,462 to 3,752,184 _RS17325 RR42_RS17330: RR42_RS17330 - glyoxalase, at 3,752,221 to 3,752,628 _RS17330 Position (kb) 3751 3752Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3750.335 kb on + strand, within RR42_RS17315at 3750.335 kb on + strand, within RR42_RS17315at 3750.336 kb on - strand, within RR42_RS17315at 3750.336 kb on - strand, within RR42_RS17315at 3750.336 kb on - strand, within RR42_RS17315at 3750.433 kb on - strandat 3750.462 kb on + strand, within RR42_RS17315at 3750.606 kb on + strand, within RR42_RS17315at 3750.606 kb on + strand, within RR42_RS17315at 3750.607 kb on - strand, within RR42_RS17315at 3750.735 kb on + strand, within RR42_RS17315at 3750.736 kb on - strand, within RR42_RS17315at 3750.736 kb on - strand, within RR42_RS17315at 3750.736 kb on - strand, within RR42_RS17315at 3750.763 kb on - strand, within RR42_RS17315at 3750.830 kb on + strandat 3750.913 kb on - strandat 3750.913 kb on - strandat 3750.913 kb on - strandat 3751.136 kb on + strand, within RR42_RS17320at 3751.136 kb on + strand, within RR42_RS17320at 3751.137 kb on - strand, within RR42_RS17320at 3751.492 kb on + strandat 3751.493 kb on - strandat 3751.527 kb on + strandat 3751.540 kb on + strand, within RR42_RS17325at 3751.561 kb on + strand, within RR42_RS17325at 3751.561 kb on + strand, within RR42_RS17325at 3751.562 kb on - strand, within RR42_RS17325at 3751.562 kb on - strand, within RR42_RS17325at 3751.651 kb on + strand, within RR42_RS17325at 3751.660 kb on + strand, within RR42_RS17325at 3751.660 kb on + strand, within RR42_RS17325at 3751.660 kb on + strand, within RR42_RS17325at 3751.661 kb on - strand, within RR42_RS17325at 3751.661 kb on - strand, within RR42_RS17325at 3751.661 kb on - strand, within RR42_RS17325at 3751.661 kb on - strand, within RR42_RS17325at 3751.729 kb on + strand, within RR42_RS17325at 3752.018 kb on - strand, within RR42_RS17325at 3752.273 kb on + strand, within RR42_RS17330at 3752.273 kb on + strand, within RR42_RS17330at 3752.274 kb on - strand, within RR42_RS17330at 3752.326 kb on + strand, within RR42_RS17330at 3752.385 kb on + strand, within RR42_RS17330at 3752.385 kb on + strand, within RR42_RS17330at 3752.386 kb on - strand, within RR42_RS17330at 3752.386 kb on - strand, within RR42_RS17330at 3752.464 kb on + strand, within RR42_RS17330at 3752.465 kb on - strand, within RR42_RS17330

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with D-Cycloserine 0.5 mg/ml
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3,750,335 + RR42_RS17315 0.54 +1.1
3,750,335 + RR42_RS17315 0.54 -1.9
3,750,336 - RR42_RS17315 0.54 +2.1
3,750,336 - RR42_RS17315 0.54 +1.3
3,750,336 - RR42_RS17315 0.54 +1.2
3,750,433 - +0.2
3,750,462 + RR42_RS17315 0.64 -1.0
3,750,606 + RR42_RS17315 0.76 -0.8
3,750,606 + RR42_RS17315 0.76 +0.2
3,750,607 - RR42_RS17315 0.76 -0.2
3,750,735 + RR42_RS17315 0.86 +0.7
3,750,736 - RR42_RS17315 0.86 +1.9
3,750,736 - RR42_RS17315 0.86 -1.2
3,750,736 - RR42_RS17315 0.86 -1.5
3,750,763 - RR42_RS17315 0.88 -0.9
3,750,830 + +0.1
3,750,913 - -0.4
3,750,913 - -1.4
3,750,913 - -0.3
3,751,136 + RR42_RS17320 0.15 -2.1
3,751,136 + RR42_RS17320 0.15 +1.4
3,751,137 - RR42_RS17320 0.15 -3.1
3,751,492 + +1.8
3,751,493 - -1.6
3,751,527 + -1.8
3,751,540 + RR42_RS17325 0.11 -1.8
3,751,561 + RR42_RS17325 0.14 -0.5
3,751,561 + RR42_RS17325 0.14 +0.4
3,751,562 - RR42_RS17325 0.14 +0.5
3,751,562 - RR42_RS17325 0.14 +2.2
3,751,651 + RR42_RS17325 0.26 +0.2
3,751,660 + RR42_RS17325 0.27 +0.5
3,751,660 + RR42_RS17325 0.27 +1.7
3,751,660 + RR42_RS17325 0.27 -0.3
3,751,661 - RR42_RS17325 0.28 +1.4
3,751,661 - RR42_RS17325 0.28 -0.1
3,751,661 - RR42_RS17325 0.28 -0.3
3,751,661 - RR42_RS17325 0.28 +0.3
3,751,729 + RR42_RS17325 0.37 -0.6
3,752,018 - RR42_RS17325 0.77 +0.7
3,752,273 + RR42_RS17330 0.13 -2.5
3,752,273 + RR42_RS17330 0.13 -0.3
3,752,274 - RR42_RS17330 0.13 -1.5
3,752,326 + RR42_RS17330 0.26 -2.4
3,752,385 + RR42_RS17330 0.40 -0.3
3,752,385 + RR42_RS17330 0.40 -2.6
3,752,386 - RR42_RS17330 0.40 +0.4
3,752,386 - RR42_RS17330 0.40 +1.2
3,752,464 + RR42_RS17330 0.60 +0.1
3,752,465 - RR42_RS17330 0.60 +0.7

Or see this region's nucleotide sequence