Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS15430

Experiment: R2A with D-Cycloserine 0.5 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with D-Cycloserine 0.5 mg/ml
3,333,620	+		RR42_RS15425	0.22	-1.1
3,333,621	-		RR42_RS15425	0.22	+1.0
3,333,659	+		RR42_RS15425	0.26	-1.1
3,334,142	+		RR42_RS15425	0.67	-0.5
3,334,143	-		RR42_RS15425	0.67	-0.5
3,334,143	-		RR42_RS15425	0.67	-0.5
3,334,355	-		RR42_RS15425	0.86	-1.3
3,334,619	+				-0.6
3,334,620	-				+0.6
3,334,841	+		RR42_RS15430	0.15	+1.0
3,334,978	+		RR42_RS15430	0.22	+0.0
3,335,013	+		RR42_RS15430	0.24	-0.2
3,335,013	+		RR42_RS15430	0.24	-2.3
3,335,013	+		RR42_RS15430	0.24	+1.6
3,335,236	+		RR42_RS15430	0.35	-0.2
3,335,237	-		RR42_RS15430	0.35	+0.1
3,335,258	+		RR42_RS15430	0.37	+0.3
3,335,258	+		RR42_RS15430	0.37	-3.1
3,335,259	-		RR42_RS15430	0.37	-0.6
3,335,259	-		RR42_RS15430	0.37	+0.8
3,335,259	-		RR42_RS15430	0.37	+0.7
3,335,295	+		RR42_RS15430	0.39	+0.5
3,335,355	+		RR42_RS15430	0.42	-4.3
3,335,355	+		RR42_RS15430	0.42	+0.8
3,335,355	+		RR42_RS15430	0.42	+0.8
3,335,355	+		RR42_RS15430	0.42	-0.7
3,335,355	+		RR42_RS15430	0.42	-0.1
3,335,356	-		RR42_RS15430	0.42	+0.7
3,335,356	-		RR42_RS15430	0.42	+1.0
3,335,356	-		RR42_RS15430	0.42	-0.2
3,335,356	-		RR42_RS15430	0.42	+0.6
3,335,356	-		RR42_RS15430	0.42	-0.6
3,335,356	-		RR42_RS15430	0.42	-0.2
3,335,376	-		RR42_RS15430	0.43	-1.2
3,335,376	-				+0.0
3,335,411	+		RR42_RS15430	0.45	+0.4
3,335,411	+		RR42_RS15430	0.45	-0.5
3,335,411	+		RR42_RS15430	0.45	-0.3
3,335,412	-		RR42_RS15430	0.45	+0.4
3,335,803	-		RR42_RS15430	0.65	-1.7
3,335,803	-		RR42_RS15430	0.65	-1.6
3,335,803	-		RR42_RS15430	0.65	-0.8
3,335,803	-		RR42_RS15430	0.65	-1.1
3,336,008	+		RR42_RS15430	0.76	-1.5
3,336,020	+		RR42_RS15430	0.77	-0.4
3,336,086	+		RR42_RS15430	0.80	+1.0
3,336,350	+				-2.0
3,336,351	-				-0.3
3,336,411	-				-2.6
3,336,517	+				+0.8
3,336,518	-				+0.8
3,336,518	-				-2.3
3,336,518	-				-1.2
3,336,689	-				-0.3
3,336,698	-				+1.4
3,336,799	-				-0.2
3,336,940	+		RR42_RS15440	0.22	-2.0
3,337,036	+		RR42_RS15440	0.30	+2.4
3,337,037	-		RR42_RS15440	0.31	-2.0
3,337,037	-		RR42_RS15440	0.31	-0.7
3,337,037	-		RR42_RS15440	0.31	-1.5
3,337,037	-		RR42_RS15440	0.31	-2.0
3,337,043	-		RR42_RS15440	0.31	+2.0
3,337,150	+		RR42_RS15440	0.41	+1.5
3,337,150	+		RR42_RS15440	0.41	+0.2
3,337,151	-		RR42_RS15440	0.41	+0.1
3,337,151	-		RR42_RS15440	0.41	+1.0
3,337,407	-		RR42_RS15440	0.64	+0.2
3,337,409	-		RR42_RS15440	0.64	+0.4
3,337,409	-		RR42_RS15440	0.64	+0.4