Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS15345

Experiment: R2A with D-Cycloserine 0.5 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with D-Cycloserine 0.5 mg/ml
3,318,011	+				-0.6
3,318,011	+				-0.9
3,318,012	-				-0.1
3,318,068	+		RR42_RS15335	0.13	+0.2
3,318,095	+		RR42_RS15335	0.18	+1.0
3,318,095	+		RR42_RS15335	0.18	+0.0
3,318,096	-		RR42_RS15335	0.18	+1.0
3,318,125	+		RR42_RS15335	0.23	+0.8
3,318,126	-		RR42_RS15335	0.24	+0.5
3,318,200	+		RR42_RS15335	0.37	+0.0
3,318,200	+		RR42_RS15335	0.37	-0.2
3,318,421	+		RR42_RS15335	0.78	+1.0
3,318,421	+		RR42_RS15335	0.78	+1.0
3,318,421	+		RR42_RS15335	0.78	+0.8
3,318,422	-		RR42_RS15335	0.78	+0.4
3,318,422	-		RR42_RS15335	0.78	+0.8
3,318,435	+		RR42_RS15335	0.80	-3.3
3,318,437	+		RR42_RS15335	0.81	-0.6
3,318,565	+				-0.3
3,318,565	+				+1.0
3,318,565	+				+1.0
3,318,565	+				-0.1
3,318,566	-				+4.0
3,318,569	+				+0.9
3,318,569	+				-2.0
3,318,569	+				-1.5
3,318,570	-				-2.3
3,318,570	-				-2.5
3,318,570	-				+1.3
3,318,570	-				+1.0
3,318,575	-				-2.1
3,318,575	-				-2.9
3,318,575	-				-0.3
3,318,702	-		RR42_RS15340	0.40	-0.9
3,318,716	-		RR42_RS15340	0.45	+0.4
3,318,716	-		RR42_RS15340	0.45	-1.0
3,318,788	-		RR42_RS15340	0.71	-2.3
3,318,788	-		RR42_RS15340	0.71	+0.2
3,318,791	+		RR42_RS15340	0.72	-0.5
3,318,792	-		RR42_RS15340	0.73	+0.0
3,318,868	+				+0.0
3,318,868	+				-2.1
3,318,868	+				+0.4
3,318,868	+				+0.2
3,318,868	+				-0.2
3,318,868	+				-0.0
3,318,869	-				-3.2
3,318,869	-				-0.9
3,318,869	-				-1.0
3,318,870	+				+0.0
3,318,870	+				+0.4
3,318,870	+				-0.2
3,318,870	+				+0.2
3,318,871	-				+0.2
3,318,871	-				+0.5
3,318,871	-				+1.0
3,318,878	-				-0.2
3,318,941	+				-0.4
3,318,941	+				-1.5
3,318,942	-				+0.4
3,319,252	-		RR42_RS15345	0.19	-2.3
3,319,389	+		RR42_RS15345	0.28	-0.6
3,319,620	+		RR42_RS15345	0.43	+0.7
3,319,620	+		RR42_RS15345	0.43	-0.4
3,319,620	+		RR42_RS15345	0.43	-2.3
3,319,620	+		RR42_RS15345	0.43	+0.9
3,319,621	-		RR42_RS15345	0.43	+0.2
3,319,621	-		RR42_RS15345	0.43	+1.6
3,319,621	-		RR42_RS15345	0.43	-0.3
3,319,621	-		RR42_RS15345	0.43	-0.3
3,319,621	-		RR42_RS15345	0.43	+0.8
3,319,992	+		RR42_RS15345	0.66	-0.1
3,319,992	+		RR42_RS15345	0.66	-0.7
3,319,992	+		RR42_RS15345	0.66	+3.0
3,319,992	+		RR42_RS15345	0.66	+1.0
3,319,993	-		RR42_RS15345	0.67	-0.7
3,319,993	-		RR42_RS15345	0.67	+0.4
3,319,993	-		RR42_RS15345	0.67	+1.3
3,319,993	-		RR42_RS15345	0.67	-1.0
3,320,382	+				-0.5
3,320,382	+				+0.3
3,320,383	-				-0.0
3,320,392	+				-0.7
3,320,392	+				+4.0
3,320,393	-				-1.5
3,320,404	+				-1.6
3,320,404	+				+1.2
3,320,404	+				-1.5
3,320,641	+		RR42_RS15350	0.11	-0.9
3,320,711	+		RR42_RS15350	0.16	+0.7
3,320,711	+		RR42_RS15350	0.16	-1.8
3,320,711	-		RR42_RS15350	0.16	+0.7
3,320,847	-		RR42_RS15350	0.27	+1.1
3,320,912	+		RR42_RS15350	0.32	-0.6
3,320,912	+		RR42_RS15350	0.32	+0.9
3,320,937	-		RR42_RS15350	0.34	-0.0
3,320,987	+		RR42_RS15350	0.38	-0.1
3,320,987	+		RR42_RS15350	0.38	+1.5
3,320,988	-		RR42_RS15350	0.38	-1.5
3,320,988	-		RR42_RS15350	0.38	+1.1
3,320,991	-		RR42_RS15350	0.39	-1.1
3,320,991	-		RR42_RS15350	0.39	-0.1
3,321,134	+		RR42_RS15350	0.50	-0.8
3,321,134	+		RR42_RS15350	0.50	+0.8
3,321,134	+		RR42_RS15350	0.50	+1.1
3,321,135	-		RR42_RS15350	0.50	-0.8
3,321,194	+		RR42_RS15350	0.55	-0.1
3,321,195	-		RR42_RS15350	0.55	-0.7
3,321,198	-		RR42_RS15350	0.55	-0.0
3,321,332	+		RR42_RS15350	0.66	-0.2
3,321,332	+		RR42_RS15350	0.66	-0.4
3,321,333	-		RR42_RS15350	0.66	+1.3
3,321,333	-		RR42_RS15350	0.66	+0.9
3,321,333	-		RR42_RS15350	0.66	+0.6