Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS13915

Experiment: R2A with D-Cycloserine 0.5 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with D-Cycloserine 0.5 mg/ml
2,998,910	+		RR42_RS13910	0.12	-4.7
2,998,910	+		RR42_RS13910	0.12	-4.6
2,998,911	-		RR42_RS13910	0.12	-2.6
2,999,312	+		RR42_RS13910	0.61	-2.8
2,999,352	+		RR42_RS13910	0.66	-4.0
2,999,352	+		RR42_RS13910	0.66	-4.9
2,999,353	-		RR42_RS13910	0.66	-1.6
2,999,353	-		RR42_RS13910	0.66	-3.3
2,999,353	-		RR42_RS13910	0.66	-2.7
2,999,353	-		RR42_RS13910	0.66	-1.3
2,999,516	+		RR42_RS13910	0.86	-3.8
2,999,517	-		RR42_RS13910	0.86	-2.8
2,999,777	-				-1.8
2,999,978	+		RR42_RS13915	0.14	+0.1
2,999,978	+		RR42_RS13915	0.14	+1.3
2,999,978	+		RR42_RS13915	0.14	-0.2
3,000,039	+		RR42_RS13915	0.17	-0.6
3,000,039	+		RR42_RS13915	0.17	-0.3
3,000,039	+		RR42_RS13915	0.17	-0.3
3,000,040	-		RR42_RS13915	0.17	+0.7
3,000,040	-		RR42_RS13915	0.17	+0.3
3,000,040	-		RR42_RS13915	0.17	+3.0
3,000,040	-		RR42_RS13915	0.17	-0.3
3,000,040	-		RR42_RS13915	0.17	+0.7
3,000,162	+		RR42_RS13915	0.22	+0.9
3,000,163	-		RR42_RS13915	0.22	+0.9
3,000,265	-		RR42_RS13915	0.27	+2.8
3,000,265	-		RR42_RS13915	0.27	+1.0
3,000,265	-		RR42_RS13915	0.27	+1.0
3,000,265	-		RR42_RS13915	0.27	+1.3
3,000,265	-		RR42_RS13915	0.27	+0.4
3,000,265	-		RR42_RS13915	0.27	+1.4
3,000,345	+		RR42_RS13915	0.30	+0.8
3,000,345	+		RR42_RS13915	0.30	+0.8
3,000,346	-		RR42_RS13915	0.30	+2.2
3,000,358	-		RR42_RS13915	0.31	+2.1
3,000,434	+		RR42_RS13915	0.34	-1.3
3,000,544	+		RR42_RS13915	0.39	-0.0
3,000,544	+		RR42_RS13915	0.39	+0.6
3,000,545	-		RR42_RS13915	0.39	+0.6
3,000,545	-		RR42_RS13915	0.39	+1.9
3,000,652	-		RR42_RS13915	0.44	+0.4
3,000,652	-		RR42_RS13915	0.44	+0.8
3,000,939	+		RR42_RS13915	0.56	-0.0
3,001,009	-		RR42_RS13915	0.59	+1.9
3,001,009	-		RR42_RS13915	0.59	+1.6
3,001,009	-		RR42_RS13915	0.59	-0.6
3,001,071	+		RR42_RS13915	0.62	-0.0
3,001,071	+		RR42_RS13915	0.62	+1.6
3,001,072	-		RR42_RS13915	0.62	+2.8
3,001,099	-		RR42_RS13915	0.63	+1.6
3,001,170	+		RR42_RS13915	0.66	+0.3
3,001,170	+		RR42_RS13915	0.66	+0.8
3,001,268	-		RR42_RS13915	0.70	+2.2
3,001,268	-		RR42_RS13915	0.70	+1.6
3,001,370	+		RR42_RS13915	0.75	-0.1
3,001,410	+		RR42_RS13915	0.77	+0.5
3,001,410	+		RR42_RS13915	0.77	+2.1
3,001,429	-		RR42_RS13915	0.77	+2.1
3,001,489	+		RR42_RS13915	0.80	+0.6
3,001,490	-		RR42_RS13915	0.80	+2.4
3,001,490	-		RR42_RS13915	0.80	+3.4
3,001,490	-		RR42_RS13915	0.80	+2.7
3,001,564	+		RR42_RS13915	0.83	+0.7
3,001,564	+		RR42_RS13915	0.83	+2.5
3,001,564	+		RR42_RS13915	0.83	+0.6
3,001,565	-		RR42_RS13915	0.83	+3.7
3,001,565	-		RR42_RS13915	0.83	+2.7
3,001,587	+		RR42_RS13915	0.84	+0.4
3,001,588	-		RR42_RS13915	0.84	+3.8
3,001,588	-		RR42_RS13915	0.84	+2.9
3,001,588	-		RR42_RS13915	0.84	+2.2
3,001,599	+		RR42_RS13915	0.85	+0.5
3,001,700	-		RR42_RS13915	0.89	+4.0
3,001,795	+				-1.0
3,001,795	+				-0.2
3,001,796	-				+3.2
3,002,029	-				+3.9
3,002,034	-				+2.9
3,002,116	-				+2.7
3,002,132	-				+3.2
3,002,133	+				-0.3
3,002,133	+				-0.5
3,002,270	+				+0.7
3,002,288	+				+1.6
3,002,288	+				+3.8
3,002,288	+				+2.6
3,002,288	+				+2.0