Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS13840

Experiment: R2A with D-Cycloserine 0.5 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with D-Cycloserine 0.5 mg/ml
2,983,742	+				-0.0
2,983,742	+				+0.4
2,983,745	-				+1.5
2,984,095	+		RR42_RS13830	0.69	+1.0
2,984,195	+				+0.6
2,984,196	-				-0.2
2,984,196	-				-1.5
2,984,215	-				-1.0
2,984,219	+				-0.7
2,984,219	+				-1.7
2,984,219	+				+0.8
2,984,220	-				-1.0
2,984,220	-				-2.4
2,984,220	-				+1.0
2,984,220	-				-1.1
2,984,220	-				+0.6
2,984,365	+		RR42_RS13835	0.24	+1.2
2,984,366	-		RR42_RS13835	0.25	+0.9
2,984,507	-		RR42_RS13835	0.86	-0.5
2,984,566	+				-1.5
2,984,567	-				-1.6
2,984,698	+				-2.9
2,984,721	-				-0.3
2,984,744	+				+3.8
2,984,744	+				-0.9
2,984,745	-				+0.7
2,984,745	-				+0.1
2,984,748	+				+0.3
2,984,748	+				-0.4
2,984,748	+				+0.0
2,984,748	+				-1.3
2,984,748	+				+0.5
2,984,748	+				+1.2
2,984,749	-				-0.7
2,984,749	-				+0.5
2,984,814	+				+0.2
2,984,914	+		RR42_RS13840	0.15	+1.4
2,984,915	-		RR42_RS13840	0.15	+0.7
2,985,017	-		RR42_RS13840	0.23	+1.6
2,985,104	-		RR42_RS13840	0.30	-1.8
2,985,274	+		RR42_RS13840	0.43	+1.4
2,985,274	+		RR42_RS13840	0.43	-1.3
2,985,274	+		RR42_RS13840	0.43	+1.3
2,985,275	-		RR42_RS13840	0.43	+0.6
2,985,275	-		RR42_RS13840	0.43	-0.2
2,985,275	-		RR42_RS13840	0.43	+0.2
2,985,275	-		RR42_RS13840	0.43	+0.0
2,985,376	+		RR42_RS13840	0.51	+0.5
2,985,376	+		RR42_RS13840	0.51	-1.0
2,985,377	-		RR42_RS13840	0.51	+0.0
2,985,377	-		RR42_RS13840	0.51	+0.7
2,985,578	+		RR42_RS13840	0.66	+0.8
2,985,637	+		RR42_RS13840	0.71	+0.5
2,985,637	+		RR42_RS13840	0.71	+0.1
2,985,638	-		RR42_RS13840	0.71	-0.2
2,985,715	+		RR42_RS13840	0.77	-2.0
2,985,715	+		RR42_RS13840	0.77	+0.1
2,985,715	+		RR42_RS13840	0.77	-0.3
2,985,716	-		RR42_RS13840	0.77	-1.5
2,985,716	-		RR42_RS13840	0.77	+1.2
2,985,775	+		RR42_RS13840	0.82	-1.8
2,985,865	+		RR42_RS13840	0.89	+1.1
2,985,865	+		RR42_RS13840	0.89	+1.2
2,985,866	-		RR42_RS13840	0.89	+0.5
2,985,866	-		RR42_RS13840	0.89	-2.2
2,985,866	-		RR42_RS13840	0.89	-0.1
2,985,868	+		RR42_RS13840	0.89	+0.0
2,985,869	-		RR42_RS13840	0.89	-1.0
2,985,892	+				+0.4
2,985,892	+				-0.4
2,985,892	+				+0.2
2,985,893	-				+1.0
2,985,893	-				+0.3
2,985,893	-				+0.6
2,985,893	-				+2.2
2,985,961	+				-1.1
2,985,961	+				+0.7
2,985,962	-				-1.0
2,985,962	-				-1.7
2,985,991	+				-0.0
2,986,201	-		RR42_RS13845	0.31	+0.4
2,986,323	+		RR42_RS13845	0.73	+0.4
2,986,323	+		RR42_RS13845	0.73	-0.3
2,986,323	+		RR42_RS13845	0.73	+1.7
2,986,324	-		RR42_RS13845	0.74	+1.7
2,986,343	+		RR42_RS13845	0.80	+0.3
2,986,344	-		RR42_RS13845	0.81	+0.9
2,986,344	-		RR42_RS13845	0.81	+1.7
2,986,355	+		RR42_RS13845	0.85	-1.0
2,986,373	+				+0.4
2,986,374	-				+0.5
2,986,605	+		RR42_RS13850	0.40	-1.3
2,986,605	+		RR42_RS13850	0.40	-2.0
2,986,606	-		RR42_RS13850	0.41	+0.3
2,986,606	-		RR42_RS13850	0.41	-0.1
2,986,819	+				-0.3
2,986,820	-				+1.2
2,986,820	-				+0.3
2,986,824	-				+0.2
2,986,889	+		RR42_RS13855	0.35	-1.0
2,986,889	+		RR42_RS13855	0.35	+1.2
2,986,890	-		RR42_RS13855	0.35	-0.7
2,986,957	+		RR42_RS13855	0.68	+0.0
2,986,957	+		RR42_RS13855	0.68	-0.8
2,986,957	+		RR42_RS13855	0.68	-0.7
2,986,957	+		RR42_RS13855	0.68	-0.5
2,986,957	+		RR42_RS13855	0.68	-1.0
2,986,958	-		RR42_RS13855	0.69	-2.0
2,986,958	-		RR42_RS13855	0.69	+1.2
2,986,958	-		RR42_RS13855	0.69	-1.2
2,986,958	-		RR42_RS13855	0.69	-0.1