Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS12965

Experiment: R2A with D-Cycloserine 0.5 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with D-Cycloserine 0.5 mg/ml
2,789,102	+				+0.6
2,789,103	-				-2.3
2,789,103	-				+0.2
2,789,114	-				-3.2
2,789,143	+				-2.9
2,789,144	-				-3.1
2,789,144	-				-0.4
2,789,144	-				-2.3
2,789,144	-				-2.8
2,789,144	-				-2.6
2,789,413	+		RR42_RS12960	0.24	-2.1
2,789,429	-		RR42_RS12960	0.26	+0.5
2,789,429	-		RR42_RS12960	0.26	+0.2
2,789,623	+		RR42_RS12960	0.49	+0.9
2,789,659	+		RR42_RS12960	0.53	-3.8
2,789,659	+		RR42_RS12960	0.53	-2.0
2,789,747	-		RR42_RS12960	0.63	-2.2
2,789,747	-		RR42_RS12960	0.63	-1.4
2,789,884	+		RR42_RS12960	0.80	+0.8
2,789,884	+		RR42_RS12960	0.80	-1.6
2,789,974	+				-1.4
2,789,974	+				-1.3
2,789,975	-				-2.6
2,789,975	-				-0.9
2,789,975	-				-1.1
2,789,975	-				-1.1
2,789,975	-				-0.5
2,789,975	-				-0.7
2,790,074	-				-1.1
2,790,194	-		RR42_RS12965	0.14	-1.0
2,790,202	+		RR42_RS12965	0.15	+0.1
2,790,202	+		RR42_RS12965	0.15	-1.2
2,790,202	+		RR42_RS12965	0.15	+0.4
2,790,212	+		RR42_RS12965	0.16	-2.5
2,790,212	+		RR42_RS12965	0.16	-0.0
2,790,212	+		RR42_RS12965	0.16	-0.2
2,790,212	+		RR42_RS12965	0.16	-1.2
2,790,212	+		RR42_RS12965	0.16	-0.9
2,790,213	-		RR42_RS12965	0.16	-3.6
2,790,280	+		RR42_RS12965	0.24	-2.0
2,790,280	+		RR42_RS12965	0.24	-3.1
2,790,281	-		RR42_RS12965	0.24	+1.1
2,790,281	-		RR42_RS12965	0.24	+0.4
2,790,281	-		RR42_RS12965	0.24	-0.9
2,790,333	+		RR42_RS12965	0.30	-0.3
2,790,398	+		RR42_RS12965	0.37	+0.6
2,790,399	-		RR42_RS12965	0.37	+0.1
2,790,439	+		RR42_RS12965	0.42	+1.8
2,790,440	-		RR42_RS12965	0.42	-0.4
2,790,538	+		RR42_RS12965	0.53	+0.8
2,790,611	-		RR42_RS12965	0.61	-0.0
2,790,670	+		RR42_RS12965	0.68	+0.2
2,790,670	+		RR42_RS12965	0.68	+2.5
2,790,751	+		RR42_RS12965	0.77	-2.9
2,790,842	-		RR42_RS12965	0.88	+0.5
2,790,842	-		RR42_RS12965	0.88	-0.3
2,790,910	+				-0.0
2,790,911	-				+0.6
2,790,993	+				-2.8
2,790,993	+				-0.5
2,790,993	+				-1.4
2,790,994	-				+1.9
2,790,994	-				+0.2
2,790,997	+				-1.1
2,790,997	+				-0.1
2,790,998	-				-0.3
2,790,998	-				-0.1
2,791,077	-				+0.2
2,791,149	+				-1.2
2,791,149	+				-0.6
2,791,150	-				-1.4
2,791,150	-				+0.3
2,791,150	-				-0.1
2,791,200	+				-2.6
2,791,302	-		RR42_RS12970	0.17	+1.1
2,791,302	-		RR42_RS12970	0.17	-0.3
2,791,328	+		RR42_RS12970	0.19	-0.3
2,791,328	+		RR42_RS12970	0.19	-1.4
2,791,400	+				+0.6
2,791,400	+		RR42_RS12970	0.25	+1.7
2,791,400	+		RR42_RS12970	0.25	-0.4
2,791,427	+		RR42_RS12970	0.27	-1.4
2,791,427	+		RR42_RS12970	0.27	-1.1
2,791,428	-		RR42_RS12970	0.27	-0.8
2,791,428	-		RR42_RS12970	0.27	-0.1
2,791,514	+		RR42_RS12970	0.33	-2.6
2,791,515	-		RR42_RS12970	0.33	-1.9
2,791,612	-		RR42_RS12970	0.41	-1.0
2,791,612	-		RR42_RS12970	0.41	-0.1
2,791,647	-		RR42_RS12970	0.43	-0.1
2,791,655	+		RR42_RS12970	0.44	-1.2
2,791,689	+		RR42_RS12970	0.47	+1.0
2,791,689	+		RR42_RS12970	0.47	+1.5
2,791,689	+		RR42_RS12970	0.47	-1.2
2,791,689	+		RR42_RS12970	0.47	+0.9
2,791,827	-		RR42_RS12970	0.57	-2.1
2,791,940	+		RR42_RS12970	0.66	+0.1
2,791,940	+		RR42_RS12970	0.66	-0.9
2,791,940	+		RR42_RS12970	0.66	-2.8
2,791,940	+		RR42_RS12970	0.66	+1.2
2,791,941	-		RR42_RS12970	0.66	-0.1
2,791,943	+		RR42_RS12970	0.66	-1.4
2,791,943	+		RR42_RS12970	0.66	-3.2
2,791,943	+		RR42_RS12970	0.66	-1.8
2,791,943	+		RR42_RS12970	0.66	-0.5
2,791,944	-		RR42_RS12970	0.66	+0.9
2,791,944	-		RR42_RS12970	0.66	-0.3