Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS12955

Experiment: R2A with D-Cycloserine 0.5 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with D-Cycloserine 0.5 mg/ml
2,787,120	+				-0.1
2,787,201	+				-0.6
2,787,202	-				+0.3
2,787,290	-				-2.1
2,787,386	+		RR42_RS12950	0.13	-1.2
2,787,387	-		RR42_RS12950	0.13	-0.3
2,787,388	+		RR42_RS12950	0.13	+1.0
2,787,388	+		RR42_RS12950	0.13	-1.9
2,787,720	-		RR42_RS12950	0.58	-0.4
2,787,721	+		RR42_RS12950	0.58	-0.3
2,787,721	+		RR42_RS12950	0.58	-0.8
2,787,722	-		RR42_RS12950	0.58	+0.9
2,787,722	-		RR42_RS12950	0.58	+0.5
2,788,012	+				+0.4
2,788,013	-				+1.4
2,788,131	+				-1.0
2,788,131	+				-3.2
2,788,131	+				-0.2
2,788,131	+				-0.1
2,788,131	+				-0.9
2,788,131	+				-2.1
2,788,132	-				+1.6
2,788,132	-				-1.4
2,788,132	-				-0.1
2,788,132	-				-0.0
2,788,132	-				-2.0
2,788,178	+		RR42_RS12955	0.13	-1.0
2,788,179	-		RR42_RS12955	0.13	+0.1
2,788,179	-		RR42_RS12955	0.13	-0.6
2,788,185	-		RR42_RS12955	0.13	+0.1
2,788,261	-		RR42_RS12955	0.20	+0.2
2,788,472	+		RR42_RS12955	0.39	+0.6
2,788,472	+		RR42_RS12955	0.39	+0.0
2,788,472	+		RR42_RS12955	0.39	+1.1
2,788,473	-		RR42_RS12955	0.40	-0.2
2,788,473	-		RR42_RS12955	0.40	-1.4
2,788,473	-		RR42_RS12955	0.40	+0.3
2,788,571	+		RR42_RS12955	0.48	-0.5
2,788,571	+		RR42_RS12955	0.48	+0.6
2,788,571	+				-0.1
2,788,571	+		RR42_RS12955	0.48	-1.0
2,788,571	+		RR42_RS12955	0.48	-1.5
2,788,571	+		RR42_RS12955	0.48	-1.4
2,788,572	-		RR42_RS12955	0.49	-0.1
2,788,572	-		RR42_RS12955	0.49	+0.0
2,788,572	-		RR42_RS12955	0.49	-2.2
2,788,572	-		RR42_RS12955	0.49	-1.2
2,788,572	-		RR42_RS12955	0.49	+0.9
2,788,572	-		RR42_RS12955	0.49	-2.6
2,788,572	-		RR42_RS12955	0.49	-0.6
2,788,572	-		RR42_RS12955	0.49	+0.0
2,788,572	-		RR42_RS12955	0.49	-2.6
2,788,572	-		RR42_RS12955	0.49	-1.8
2,788,572	-		RR42_RS12955	0.49	-1.1
2,788,691	-		RR42_RS12955	0.59	+0.7
2,788,691	-		RR42_RS12955	0.59	-0.9
2,788,851	+		RR42_RS12955	0.74	-1.6
2,788,851	+		RR42_RS12955	0.74	-0.4
2,788,852	-		RR42_RS12955	0.74	-0.4
2,788,869	+		RR42_RS12955	0.75	+0.5
2,788,869	+		RR42_RS12955	0.75	-0.1
2,788,878	-		RR42_RS12955	0.76	+0.4
2,788,953	+		RR42_RS12955	0.83	+0.7
2,788,953	+		RR42_RS12955	0.83	-2.1
2,788,954	-		RR42_RS12955	0.83	-3.9
2,788,954	-		RR42_RS12955	0.83	-2.4
2,788,954	-		RR42_RS12955	0.83	-1.2
2,789,102	+				+0.6
2,789,103	-				-2.3
2,789,103	-				+0.2
2,789,114	-				-3.2
2,789,143	+				-2.9
2,789,144	-				-3.1
2,789,144	-				-0.4
2,789,144	-				-2.3
2,789,144	-				-2.8
2,789,144	-				-2.6
2,789,413	+		RR42_RS12960	0.24	-2.1
2,789,429	-		RR42_RS12960	0.26	+0.5
2,789,429	-		RR42_RS12960	0.26	+0.2
2,789,623	+		RR42_RS12960	0.49	+0.9
2,789,659	+		RR42_RS12960	0.53	-3.8
2,789,659	+		RR42_RS12960	0.53	-2.0
2,789,747	-		RR42_RS12960	0.63	-2.2
2,789,747	-		RR42_RS12960	0.63	-1.4
2,789,884	+		RR42_RS12960	0.80	+0.8
2,789,884	+		RR42_RS12960	0.80	-1.6
2,789,974	+				-1.4
2,789,974	+				-1.3
2,789,975	-				-2.6
2,789,975	-				-0.9
2,789,975	-				-1.1
2,789,975	-				-1.1
2,789,975	-				-0.5
2,789,975	-				-0.7
2,790,074	-				-1.1