Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS12820

Experiment: R2A with D-Cycloserine 0.5 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with D-Cycloserine 0.5 mg/ml
2,752,062	+				-2.1
2,752,131	-				-1.5
2,752,133	-				-1.6
2,752,262	+				-2.1
2,752,263	-				-2.4
2,752,263	-				-2.6
2,752,264	+				+1.0
2,752,685	+		RR42_RS12815	0.78	+0.9
2,752,735	-		RR42_RS12815	0.89	-2.1
2,752,735	-		RR42_RS12815	0.89	+0.1
2,752,735	-		RR42_RS12815	0.89	-0.8
2,752,837	-				+0.4
2,752,837	-				-1.4
2,752,866	+				+0.6
2,752,867	-				-0.8
2,752,951	+				-1.9
2,753,268	+		RR42_RS12820	0.25	+1.2
2,753,269	-		RR42_RS12820	0.25	+0.5
2,753,361	-		RR42_RS12820	0.31	-1.2
2,753,361	-		RR42_RS12820	0.31	-0.2
2,753,484	-		RR42_RS12820	0.40	-0.6
2,753,504	+		RR42_RS12820	0.41	+0.2
2,754,035	+		RR42_RS12820	0.76	-0.5
2,754,036	-		RR42_RS12820	0.76	+0.6
2,754,036	-		RR42_RS12820	0.76	+4.6
2,754,044	+		RR42_RS12820	0.76	+0.8
2,754,044	+		RR42_RS12820	0.76	-0.3
2,754,044	+		RR42_RS12820	0.76	+0.4
2,754,045	-		RR42_RS12820	0.76	+3.1
2,754,045	-		RR42_RS12820	0.76	+2.5
2,754,065	+		RR42_RS12820	0.78	-0.5
2,754,065	+		RR42_RS12820	0.78	+0.5
2,754,066	-		RR42_RS12820	0.78	+1.3
2,754,066	-		RR42_RS12820	0.78	-0.4
2,754,183	-		RR42_RS12820	0.85	+0.5
2,754,183	-		RR42_RS12820	0.85	+1.3
2,754,189	+		RR42_RS12820	0.86	+0.6
2,754,203	+		RR42_RS12820	0.87	+1.2
2,754,465	-				-0.7
2,754,485	-				-2.2
2,754,608	+		RR42_RS12825	0.11	-1.5
2,754,609	-		RR42_RS12825	0.11	+0.6
2,754,609	-		RR42_RS12825	0.11	+1.4
2,754,609	-		RR42_RS12825	0.11	-0.7
2,754,620	+		RR42_RS12825	0.11	+0.5
2,754,620	+		RR42_RS12825	0.11	+0.3
2,754,620	+		RR42_RS12825	0.11	-0.4
2,754,653	+		RR42_RS12825	0.14	-0.8
2,754,653	+		RR42_RS12825	0.14	-0.0
2,754,653	+		RR42_RS12825	0.14	+0.9
2,754,653	+		RR42_RS12825	0.14	-1.6
2,754,654	-		RR42_RS12825	0.14	+0.3
2,754,654	-		RR42_RS12825	0.14	+0.8
2,754,842	+		RR42_RS12825	0.29	-0.3
2,754,842	+		RR42_RS12825	0.29	-0.6
2,754,842	+		RR42_RS12825	0.29	+0.6
2,754,842	+		RR42_RS12825	0.29	-0.1
2,754,842	+		RR42_RS12825	0.29	-1.4
2,754,843	-		RR42_RS12825	0.29	-1.1
2,754,843	-		RR42_RS12825	0.29	-1.8
2,754,843	-		RR42_RS12825	0.29	-1.4
2,755,160	+		RR42_RS12825	0.55	-0.1
2,755,197	+		RR42_RS12825	0.57	+1.7
2,755,283	-		RR42_RS12825	0.64	-0.5
2,755,283	-		RR42_RS12825	0.64	+2.8
2,755,283	-		RR42_RS12825	0.64	+1.2
2,755,283	-		RR42_RS12825	0.64	-1.3
2,755,323	-		RR42_RS12825	0.68	+0.6
2,755,340	+		RR42_RS12825	0.69	+1.7
2,755,341	-		RR42_RS12825	0.69	+1.7
2,755,341	-		RR42_RS12825	0.69	+1.2
2,755,342	+		RR42_RS12825	0.69	+0.4