Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS10325

Experiment: R2A with D-Cycloserine 0.5 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with D-Cycloserine 0.5 mg/ml
2,207,450	+		RR42_RS10320	0.27	-0.7
2,207,451	-		RR42_RS10320	0.27	+0.9
2,207,451	-		RR42_RS10320	0.27	-0.3
2,207,484	+		RR42_RS10320	0.31	+0.6
2,207,548	+		RR42_RS10320	0.40	+0.5
2,207,549	-		RR42_RS10320	0.40	-0.1
2,207,557	+		RR42_RS10320	0.41	-0.3
2,207,558	-		RR42_RS10320	0.41	-0.9
2,207,558	-		RR42_RS10320	0.41	-1.3
2,207,558	-		RR42_RS10320	0.41	-0.3
2,207,675	+		RR42_RS10320	0.56	+0.4
2,207,676	-		RR42_RS10320	0.56	+1.0
2,207,895	-		RR42_RS10320	0.85	+0.7
2,207,895	-		RR42_RS10320	0.85	+0.4
2,207,989	-				+0.2
2,208,157	+				-2.5
2,208,180	+				-1.3
2,208,180	+				-1.3
2,208,317	+				+1.7
2,208,318	-				+0.2
2,208,335	+				+1.4
2,208,344	+				+0.3
2,208,345	-				+1.9
2,208,389	+				-0.3
2,208,389	+				-1.3
2,208,390	-				+1.8
2,208,390	-				-1.3
2,208,509	+				-2.1
2,208,510	-				+1.1
2,208,510	-				-0.2
2,208,513	+				-1.9
2,208,514	-				-1.7
2,208,514	-				-1.0
2,208,978	+		RR42_RS10325	0.32	-0.6
2,208,978	+		RR42_RS10325	0.32	+0.5
2,208,978	+		RR42_RS10325	0.32	+1.4
2,208,979	-		RR42_RS10325	0.32	+1.2
2,208,979	-		RR42_RS10325	0.32	+0.1
2,208,979	-		RR42_RS10325	0.32	-1.7
2,208,979	-		RR42_RS10325	0.32	-0.2
2,208,980	+		RR42_RS10325	0.32	+0.4
2,208,980	+		RR42_RS10325	0.32	+0.2
2,208,981	-		RR42_RS10325	0.32	+0.5
2,208,981	-		RR42_RS10325	0.32	+2.2
2,208,981	-		RR42_RS10325	0.32	+1.0
2,208,981	-		RR42_RS10325	0.32	-1.8
2,208,981	-		RR42_RS10325	0.32	-0.3
2,208,981	-		RR42_RS10325	0.32	-0.5
2,209,138	-		RR42_RS10325	0.40	-0.9
2,209,200	+		RR42_RS10325	0.43	+0.6
2,209,200	+		RR42_RS10325	0.43	-0.2
2,209,201	-		RR42_RS10325	0.43	-1.9
2,209,201	-		RR42_RS10325	0.43	+0.6
2,209,201	-		RR42_RS10325	0.43	+0.3
2,209,304	+		RR42_RS10325	0.48	-0.2
2,209,305	-		RR42_RS10325	0.48	-1.3
2,209,305	-		RR42_RS10325	0.48	+0.2
2,209,461	+		RR42_RS10325	0.55	+1.3
2,209,462	-		RR42_RS10325	0.55	+0.3
2,209,528	+		RR42_RS10325	0.58	+2.0
2,209,528	+		RR42_RS10325	0.58	+0.2
2,209,608	-		RR42_RS10325	0.62	-3.0
2,209,823	+		RR42_RS10325	0.73	-0.3
2,210,006	+		RR42_RS10325	0.81	-0.8
2,210,388	+				+0.2
2,210,540	+				-0.3
2,210,838	+		RR42_RS10330	0.24	+0.7
2,210,838	+		RR42_RS10330	0.24	+0.4
2,210,838	+		RR42_RS10330	0.24	-2.7
2,210,838	+		RR42_RS10330	0.24	+2.2
2,210,838	+		RR42_RS10330	0.24	+0.3
2,210,839	-		RR42_RS10330	0.24	-0.2
2,210,839	-		RR42_RS10330	0.24	-0.1
2,210,839	-		RR42_RS10330	0.24	+0.8
2,210,839	-		RR42_RS10330	0.24	-0.6
2,210,862	+		RR42_RS10330	0.25	+0.4
2,210,863	-		RR42_RS10330	0.25	+1.4
2,211,350	+		RR42_RS10330	0.52	-1.8