Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS09080

Experiment: R2A with D-Cycloserine 0.5 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with D-Cycloserine 0.5 mg/ml
1,909,448	+		RR42_RS09075	0.29	+0.8
1,909,514	+		RR42_RS09075	0.34	+0.2
1,909,515	-		RR42_RS09075	0.34	-0.2
1,909,530	-		RR42_RS09075	0.35	-3.2
1,909,831	-		RR42_RS09075	0.58	+0.7
1,910,034	-		RR42_RS09075	0.74	-0.4
1,910,034	-		RR42_RS09075	0.74	-1.0
1,910,222	+		RR42_RS09075	0.88	-0.8
1,910,296	+				+0.5
1,910,297	-				+0.1
1,910,321	+				+1.2
1,910,322	-				-0.4
1,910,383	+				-0.6
1,910,384	-				-1.3
1,910,389	-				-0.5
1,910,424	+				+0.8
1,910,544	+				+1.0
1,910,544	+				-1.0
1,910,544	+				-0.1
1,910,545	-				+0.4
1,910,545	-				+1.5
1,910,545	-				-0.8
1,910,545	-				-1.9
1,910,545	-				-0.5
1,910,549	-				-0.0
1,910,549	-				+0.7
1,910,639	+		RR42_RS09080	0.16	-0.0
1,910,651	+		RR42_RS09080	0.17	+0.0
1,910,652	-		RR42_RS09080	0.17	+1.1
1,910,748	+		RR42_RS09080	0.25	+0.6
1,910,748	+		RR42_RS09080	0.25	-0.4
1,910,748	+		RR42_RS09080	0.25	+2.3
1,910,748	+		RR42_RS09080	0.25	+0.0
1,910,749	-		RR42_RS09080	0.25	-0.5
1,910,833	+		RR42_RS09080	0.31	-0.4
1,910,834	-		RR42_RS09080	0.31	+1.0
1,911,037	+		RR42_RS09080	0.47	-0.0
1,911,327	+		RR42_RS09080	0.69	-0.7
1,911,516	-		RR42_RS09080	0.83	-0.1
1,911,516	-		RR42_RS09080	0.83	-0.8
1,911,516	-		RR42_RS09080	0.83	-0.0
1,911,557	-		RR42_RS09080	0.86	+0.5
1,912,094	-		RR42_RS09085	0.65	-2.5
1,912,152	+		RR42_RS09085	0.76	-0.3
1,912,392	+				+1.2
1,912,393	-				+0.6
1,912,413	+				+0.6
1,912,425	+				+0.4
1,912,461	+				-1.3
1,912,474	-				-0.4
1,912,519	-				-0.3
1,912,663	-		RR42_RS09090	0.16	+0.6