Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS07870

Experiment: R2A with D-Cycloserine 0.5 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with D-Cycloserine 0.5 mg/ml
1,687,089	+				+0.6
1,687,090	-				-2.2
1,687,090	-				-0.0
1,687,090	-				-1.6
1,687,090	-				+0.2
1,687,129	+				+0.2
1,687,130	-				-0.4
1,687,130	-				+0.4
1,687,147	+				+0.4
1,687,148	-				-0.0
1,687,148	-				-0.0
1,687,483	+		RR42_RS07865	0.20	-3.5
1,687,537	+		RR42_RS07865	0.31	+0.8
1,687,537	+		RR42_RS07865	0.31	-1.0
1,687,537	+		RR42_RS07865	0.31	+0.1
1,687,538	-		RR42_RS07865	0.31	+0.5
1,687,579	+		RR42_RS07865	0.39	-2.9
1,687,580	-		RR42_RS07865	0.39	+0.7
1,687,580	-		RR42_RS07865	0.39	+0.7
1,687,858	+				+1.2
1,688,041	+				+0.8
1,688,041	+				+0.3
1,688,042	-				+0.2
1,688,109	-		RR42_RS07870	0.13	+0.7
1,688,196	-		RR42_RS07870	0.28	+1.9
1,688,196	-		RR42_RS07870	0.28	+3.6
1,688,449	+		RR42_RS07870	0.74	+1.2
1,688,449	+		RR42_RS07870	0.74	+2.4
1,688,449	+		RR42_RS07870	0.74	+5.9
1,688,449	+		RR42_RS07870	0.74	+2.4
1,688,450	-		RR42_RS07870	0.75	+1.6
1,688,450	-		RR42_RS07870	0.75	+3.2
1,688,450	-		RR42_RS07870	0.75	+3.3
1,688,588	+				+1.5
1,688,588	+				+2.3
1,688,588	+				+0.8
1,688,711	+				+2.1
1,688,718	+				+1.9
1,688,861	-				-0.7
1,688,916	+				+0.2
1,688,916	+				-2.7
1,688,916	+				-0.4
1,688,916	+				+0.3
1,688,916	+				-0.1
1,688,916	+				+0.4
1,688,916	+				+1.1
1,688,916	+				-0.4
1,688,916	+				+0.8
1,688,916	+				+1.0
1,688,917	-				+0.8
1,688,917	-				-0.6
1,689,079	+		RR42_RS07875	0.15	+0.4
1,689,081	+		RR42_RS07875	0.15	+1.2
1,689,081	+		RR42_RS07875	0.15	+0.7
1,689,081	+		RR42_RS07875	0.15	-0.4
1,689,082	-		RR42_RS07875	0.15	-0.2
1,689,082	-		RR42_RS07875	0.15	-1.2
1,689,082	-		RR42_RS07875	0.15	+0.1
1,689,082	-		RR42_RS07875	0.15	-1.8
1,689,156	+		RR42_RS07875	0.21	+0.8
1,689,156	+		RR42_RS07875	0.21	-0.2
1,689,157	-		RR42_RS07875	0.21	+1.0
1,689,157	-		RR42_RS07875	0.21	-0.2
1,689,157	-		RR42_RS07875	0.21	-1.2
1,689,157	-		RR42_RS07875	0.21	+0.4
1,689,165	+		RR42_RS07875	0.21	+1.1
1,689,420	+		RR42_RS07875	0.41	-3.6
1,689,420	+		RR42_RS07875	0.41	+1.5
1,689,420	+		RR42_RS07875	0.41	-0.6
1,689,421	-		RR42_RS07875	0.41	+1.0
1,689,421	-		RR42_RS07875	0.41	+1.6
1,689,421	-		RR42_RS07875	0.41	-1.5
1,689,435	+		RR42_RS07875	0.42	-2.2
1,689,435	+		RR42_RS07875	0.42	+0.6
1,689,435	+		RR42_RS07875	0.42	-0.7
1,689,435	+		RR42_RS07875	0.42	+0.4
1,689,435	+		RR42_RS07875	0.42	+0.8
1,689,436	-		RR42_RS07875	0.42	-1.2
1,689,436	-		RR42_RS07875	0.42	+0.4
1,689,436	-		RR42_RS07875	0.42	-2.5
1,689,436	-		RR42_RS07875	0.42	+1.0
1,689,510	+		RR42_RS07875	0.48	-1.1
1,689,510	+		RR42_RS07875	0.48	+0.6
1,689,510	+		RR42_RS07875	0.48	-1.0
1,689,511	-		RR42_RS07875	0.48	+0.2