Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS07775

Experiment: R2A with D-Cycloserine 0.5 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with D-Cycloserine 0.5 mg/ml
1,663,914	+				+0.1
1,663,914	+				-0.9
1,663,927	+				+0.1
1,664,011	-				-0.1
1,664,092	+		RR42_RS07770	0.16	-3.0
1,664,093	-		RR42_RS07770	0.17	-0.0
1,664,093	-		RR42_RS07770	0.17	-1.3
1,664,197	+		RR42_RS07770	0.29	-2.2
1,664,205	+		RR42_RS07770	0.30	+1.3
1,664,205	+		RR42_RS07770	0.30	+0.3
1,664,206	-		RR42_RS07770	0.30	-2.6
1,664,478	+		RR42_RS07770	0.63	-1.1
1,664,479	-		RR42_RS07770	0.63	-0.3
1,664,726	-				-0.3
1,664,766	+				+0.4
1,664,842	-				+0.4
1,664,883	-				+0.4
1,664,953	-		RR42_RS07775	0.13	+2.1
1,664,953	-		RR42_RS07775	0.13	+0.2
1,665,049	-		RR42_RS07775	0.23	-0.2
1,665,049	-		RR42_RS07775	0.23	-1.5
1,665,189	+		RR42_RS07775	0.39	-0.5
1,665,190	-		RR42_RS07775	0.39	+0.8
1,665,190	-		RR42_RS07775	0.39	-0.8
1,665,297	-		RR42_RS07775	0.51	+0.3
1,665,313	+		RR42_RS07775	0.53	-0.2
1,665,355	-		RR42_RS07775	0.58	+0.6
1,665,429	+		RR42_RS07775	0.66	-0.2
1,665,429	+		RR42_RS07775	0.66	+0.2
1,665,429	+		RR42_RS07775	0.66	-0.1
1,665,429	+		RR42_RS07775	0.66	+0.8
1,665,430	-		RR42_RS07775	0.66	-2.0
1,665,430	-		RR42_RS07775	0.66	+1.0
1,665,440	+		RR42_RS07775	0.67	+0.1
1,665,480	+		RR42_RS07775	0.72	+0.3
1,665,490	+		RR42_RS07775	0.73	+0.4
1,665,663	+				-0.0
1,665,706	+				-1.8
1,665,790	+				-0.6
1,665,790	+				+0.9
1,665,791	-				-1.5
1,665,794	-				-1.5
1,665,794	-				-1.5
1,665,801	+				-0.5
1,665,801	+				-0.3
1,665,802	-				+1.8
1,666,020	+				+0.0
1,666,020	+				-0.6
1,666,021	-				+1.4
1,666,024	+				-1.8
1,666,025	-				+0.1
1,666,152	-		RR42_RS07780	0.30	-0.3
1,666,236	+		RR42_RS07780	0.76	+0.7
1,666,237	-		RR42_RS07780	0.77	+1.5
1,666,349	+				-2.0
1,666,349	+				+0.9
1,666,350	-				+0.9
1,666,350	-				-0.4
1,666,350	-				-1.6
1,666,350	-				-0.1
1,666,386	-				-0.1
1,666,499	-				-1.0
1,666,531	+		RR42_RS07785	0.19	-2.0
1,666,570	-		RR42_RS07785	0.33	+0.1
1,666,573	+		RR42_RS07785	0.34	-0.2
1,666,574	-		RR42_RS07785	0.34	-0.2
1,666,624	-		RR42_RS07785	0.52	+1.4
1,666,687	+		RR42_RS07785	0.74	-0.8
1,666,689	+		RR42_RS07785	0.74	-1.3