Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS07270

Experiment: R2A with D-Cycloserine 0.5 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with D-Cycloserine 0.5 mg/ml
1,545,407	+		RR42_RS07260	0.54	-1.7
1,545,407	+		RR42_RS07260	0.54	-1.2
1,545,407	+		RR42_RS07260	0.54	-1.3
1,545,407	+		RR42_RS07260	0.54	-0.8
1,545,407	+		RR42_RS07260	0.54	+1.2
1,545,408	-		RR42_RS07260	0.54	+2.4
1,545,408	-		RR42_RS07260	0.54	-2.2
1,545,420	-		RR42_RS07260	0.57	-0.5
1,545,575	+				+0.8
1,545,576	-				+0.8
1,545,598	+				-1.4
1,545,637	+				-0.3
1,545,638	-				-0.4
1,545,638	-				+0.1
1,545,638	-				-2.0
1,545,638	-				-0.7
1,545,679	+				-0.2
1,545,679	+				-1.2
1,545,680	-				-0.9
1,545,878	+		RR42_RS07265	0.36	-0.8
1,545,878	+		RR42_RS07265	0.36	-1.1
1,546,057	+				-2.0
1,546,057	+				-0.2
1,546,058	-				-0.9
1,546,107	+				-0.0
1,546,108	-				+0.8
1,546,202	-				-0.3
1,546,513	-				-1.6
1,546,513	-				-2.4
1,546,727	-		RR42_RS07270	0.11	-0.4
1,547,186	+		RR42_RS07270	0.20	+0.3
1,547,403	-		RR42_RS07270	0.25	+2.0
1,547,405	+		RR42_RS07270	0.25	+2.2
1,547,405	+		RR42_RS07270	0.25	+0.6
1,547,405	+		RR42_RS07270	0.25	+0.1
1,547,405	+		RR42_RS07270	0.25	+1.0
1,547,405	+		RR42_RS07270	0.25	-0.2
1,547,405	+		RR42_RS07270	0.25	-3.2
1,547,406	-		RR42_RS07270	0.25	-0.6
1,547,417	-		RR42_RS07270	0.25	-2.1
1,547,521	-		RR42_RS07270	0.27	-1.0
1,547,741	+		RR42_RS07270	0.31	+0.3
1,547,741	+		RR42_RS07270	0.31	-0.6
1,547,742	-		RR42_RS07270	0.32	-0.2
1,547,742	-		RR42_RS07270	0.32	-0.4
1,547,761	-		RR42_RS07270	0.32	-2.1
1,547,762	+		RR42_RS07270	0.32	-0.1
1,547,763	-		RR42_RS07270	0.32	-0.2
1,547,763	-		RR42_RS07270	0.32	-1.3
1,548,012	+		RR42_RS07270	0.37	-0.3
1,548,012	+		RR42_RS07270	0.37	-0.4
1,548,045	+		RR42_RS07270	0.38	+1.5
1,548,045	+		RR42_RS07270	0.38	-0.7
1,548,210	-		RR42_RS07270	0.41	-0.7
1,548,326	+		RR42_RS07270	0.43	+1.7
1,548,327	-		RR42_RS07270	0.43	+0.6
1,548,562	+		RR42_RS07270	0.48	-0.3
1,548,563	-		RR42_RS07270	0.48	-0.3
1,548,770	+		RR42_RS07270	0.53	-0.8
1,548,770	+		RR42_RS07270	0.53	-0.6
1,548,958	-		RR42_RS07270	0.56	+1.1
1,548,989	+		RR42_RS07270	0.57	-0.3
1,548,989	+		RR42_RS07270	0.57	+0.3
1,548,990	-		RR42_RS07270	0.57	+1.2
1,548,990	-		RR42_RS07270	0.57	-0.4
1,548,990	-		RR42_RS07270	0.57	+1.2
1,549,026	-		RR42_RS07270	0.58	-2.5
1,549,035	-		RR42_RS07270	0.58	+1.8
1,549,472	+		RR42_RS07270	0.67	+0.0
1,549,509	-		RR42_RS07270	0.68	-0.2
1,549,517	-		RR42_RS07270	0.68	+0.2
1,549,775	+		RR42_RS07270	0.73	+0.2
1,549,775	+		RR42_RS07270	0.73	-2.6
1,549,775	+		RR42_RS07270	0.73	+0.1
1,549,775	+		RR42_RS07270	0.73	+1.3
1,549,776	-		RR42_RS07270	0.73	-0.5
1,549,964	+		RR42_RS07270	0.77	+1.6
1,549,965	-		RR42_RS07270	0.77	-0.2
1,550,054	+		RR42_RS07270	0.79	+0.2
1,550,054	+		RR42_RS07270	0.79	-0.6
1,550,054	+		RR42_RS07270	0.79	-0.2
1,550,054	+		RR42_RS07270	0.79	-0.8
1,550,055	-		RR42_RS07270	0.79	-3.3
1,550,055	-		RR42_RS07270	0.79	-0.4
1,550,055	-		RR42_RS07270	0.79	+2.8
1,550,069	+		RR42_RS07270	0.79	+0.1
1,550,069	+		RR42_RS07270	0.79	+1.3
1,550,070	-		RR42_RS07270	0.79	-1.1
1,550,109	+		RR42_RS07270	0.80	-1.2
1,550,110	-		RR42_RS07270	0.80	-1.7
1,550,136	-		RR42_RS07270	0.81	-1.2
1,550,315	+		RR42_RS07270	0.84	-1.0
1,550,316	-		RR42_RS07270	0.84	+0.3
1,550,345	+		RR42_RS07270	0.85	-1.2
1,550,346	-		RR42_RS07270	0.85	-2.5
1,550,847	-				+1.7
1,550,915	+				-0.1
1,550,966	+				+0.2
1,550,967	-				-0.2
1,550,969	+				-3.5
1,550,970	-				+1.1
1,550,970	-				-1.3
1,550,970	-				+0.4
1,551,184	+				-0.2
1,551,184	+				+1.2
1,551,185	-				+0.5
1,551,188	+				-3.0
1,551,189	-				-1.0
1,551,189	-				-1.2
1,551,189	-				+0.7
1,551,193	+				-0.2
1,551,193	+				-0.0
1,551,193	+				+1.3
1,551,193	+				-0.7
1,551,194	-				+1.3
1,551,194	-				+0.5
1,551,200	+				+1.1
1,551,200	+				-2.2
1,551,200	+				-1.1
1,551,252	+				+1.2
1,551,253	-				+0.8
1,551,314	-				+1.3
1,551,314	-				-2.0
1,551,314	-				-1.5
1,551,428	+				+0.6
1,551,428	+				-0.8
1,551,428	+				+0.8
1,551,428	+				-2.8
1,551,428	+				-0.1
1,551,428	+				+1.2
1,551,428	+				+0.3
1,551,428	+				-1.3
1,551,429	-				-0.1
1,551,429	-				+0.8
1,551,429	-				-1.5
1,551,429	-				+0.2
1,551,429	-				-1.7
1,551,435	+				+1.3
1,551,435	+				-0.4
1,551,436	-				-2.6
1,551,446	+				-0.3
1,551,447	-				+0.8
1,551,805	+		RR42_RS07275	0.25	+0.7
1,551,932	+		RR42_RS07275	0.33	+1.0
1,551,966	+		RR42_RS07275	0.35	-0.1
1,551,966	+		RR42_RS07275	0.35	-0.2
1,551,966	+		RR42_RS07275	0.35	+0.1
1,551,966	+		RR42_RS07275	0.35	+0.1
1,551,967	-		RR42_RS07275	0.35	+0.8
1,551,967	-		RR42_RS07275	0.35	+1.0
1,551,998	+		RR42_RS07275	0.37	+2.2
1,551,999	-		RR42_RS07275	0.37	-1.1
1,552,041	-		RR42_RS07275	0.40	-0.0