Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS06965

Experiment: R2A with D-Cycloserine 0.5 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with D-Cycloserine 0.5 mg/ml
1,496,688	+				-2.6
1,496,834	+				-2.1
1,496,834	+				-2.5
1,496,933	+		RR42_RS06960	0.14	-1.2
1,497,108	+		RR42_RS06960	0.40	-1.1
1,497,108	+		RR42_RS06960	0.40	-0.0
1,497,109	-		RR42_RS06960	0.40	+0.2
1,497,109	-		RR42_RS06960	0.40	+0.4
1,497,141	-		RR42_RS06960	0.45	-1.9
1,497,166	-		RR42_RS06960	0.48	-0.9
1,497,307	-		RR42_RS06960	0.69	-0.2
1,497,307	-		RR42_RS06960	0.69	+0.8
1,497,396	+		RR42_RS06960	0.82	+0.6
1,497,397	-		RR42_RS06960	0.82	+1.5
1,497,403	+		RR42_RS06960	0.83	+0.4
1,497,433	-		RR42_RS06960	0.87	+0.5
1,497,454	-				-1.3
1,497,495	-				+0.8
1,497,866	-		RR42_RS06965	0.73	-1.7
1,497,866	-		RR42_RS06965	0.73	+0.1
1,497,868	+		RR42_RS06965	0.73	-2.3
1,497,952	+				+0.1
1,497,952	+				-0.9
1,497,952	+				-2.1
1,497,953	-				-1.5
1,497,953	-				-1.3
1,497,953	-				-0.1
1,497,953	-				-0.4
1,497,981	-				+0.2
1,498,000	+				+0.3
1,498,191	+		RR42_RS06970	0.17	+0.8
1,498,191	+		RR42_RS06970	0.17	+1.1
1,498,200	-		RR42_RS06970	0.18	-0.7
1,498,254	+		RR42_RS06970	0.21	+0.1
1,498,255	-		RR42_RS06970	0.21	-2.0
1,498,393	+		RR42_RS06970	0.31	-0.2
1,498,394	-		RR42_RS06970	0.31	+1.6
1,498,394	-		RR42_RS06970	0.31	-0.2
1,498,429	+		RR42_RS06970	0.33	-1.7
1,498,429	+		RR42_RS06970	0.33	+0.3
1,498,478	-		RR42_RS06970	0.37	-0.4
1,498,659	+		RR42_RS06970	0.50	-2.0
1,498,679	-		RR42_RS06970	0.51	-0.3
1,498,728	-		RR42_RS06970	0.54	+0.2
1,498,795	+		RR42_RS06970	0.59	+0.4
1,498,813	+		RR42_RS06970	0.60	+0.0
1,498,813	+		RR42_RS06970	0.60	+0.4
1,498,813	+		RR42_RS06970	0.60	-1.0
1,498,814	-		RR42_RS06970	0.60	-0.1
1,498,814	-		RR42_RS06970	0.60	-1.2