Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS06300

Experiment: R2A with D-Cycloserine 0.5 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with D-Cycloserine 0.5 mg/ml
1,382,264	-		RR42_RS06295	0.58	-0.2
1,382,312	-		RR42_RS06295	0.60	-0.1
1,382,312	-		RR42_RS06295	0.60	+0.6
1,382,312	-		RR42_RS06295	0.60	+0.5
1,382,312	-		RR42_RS06295	0.60	-1.0
1,382,392	+		RR42_RS06295	0.64	-0.1
1,382,392	+		RR42_RS06295	0.64	+0.1
1,382,393	-		RR42_RS06295	0.64	+0.4
1,382,397	-		RR42_RS06295	0.64	-2.1
1,382,679	+		RR42_RS06295	0.79	-0.8
1,382,854	+		RR42_RS06295	0.88	-0.7
1,382,874	+		RR42_RS06295	0.89	+0.9
1,382,874	+		RR42_RS06295	0.89	-1.0
1,382,875	-		RR42_RS06295	0.89	+0.2
1,382,918	+				-1.4
1,382,919	-				+0.1
1,382,957	-				+0.3
1,383,214	+				-0.8
1,383,214	+				-0.0
1,383,214	+				-0.1
1,383,214	+				+0.4
1,383,215	-				+0.7
1,383,215	-				-1.7
1,383,215	-				-0.4
1,383,373	+				-2.2
1,383,373	+				-0.7
1,383,403	+				+0.1
1,383,403	+				-1.4
1,383,403	+				-0.4
1,383,404	-				-0.3
1,383,583	+		RR42_RS06300	0.22	+1.1
1,383,584	-		RR42_RS06300	0.22	+0.1
1,383,715	+		RR42_RS06300	0.31	-1.3
1,383,715	+		RR42_RS06300	0.31	-3.0
1,383,781	+		RR42_RS06300	0.35	-0.4
1,383,968	-		RR42_RS06300	0.48	+0.9
1,383,968	-		RR42_RS06300	0.48	+0.9
1,383,968	-		RR42_RS06300	0.48	+0.8
1,384,223	-		RR42_RS06300	0.65	-0.9
1,384,546	+		RR42_RS06300	0.87	-2.1
1,384,552	+		RR42_RS06300	0.87	-0.7
1,384,552	+		RR42_RS06300	0.87	-2.3
1,384,552	+		RR42_RS06300	0.87	-0.0
1,384,715	+				+0.5
1,384,776	+				+0.9
1,384,824	-				-0.4
1,384,962	-		RR42_RS06305	0.11	+0.4
1,385,001	-		RR42_RS06305	0.17	-0.3
1,385,001	-		RR42_RS06305	0.17	-0.7
1,385,001	-		RR42_RS06305	0.17	-0.9
1,385,001	-		RR42_RS06305	0.17	-0.5
1,385,081	+		RR42_RS06305	0.29	-0.6
1,385,081	+		RR42_RS06305	0.29	-0.2
1,385,082	-		RR42_RS06305	0.29	-1.0
1,385,082	-		RR42_RS06305	0.29	+0.9
1,385,082	-		RR42_RS06305	0.29	+1.1
1,385,082	-		RR42_RS06305	0.29	+0.1
1,385,082	-		RR42_RS06305	0.29	-1.1
1,385,207	+		RR42_RS06305	0.49	+1.4
1,385,207	+		RR42_RS06305	0.49	-1.1
1,385,225	+		RR42_RS06305	0.52	-0.3
1,385,226	-		RR42_RS06305	0.52	+1.6
1,385,226	-		RR42_RS06305	0.52	-0.0
1,385,516	+				+0.0
1,385,517	-				-1.1
1,385,517	-				+1.0
1,385,517	-				-0.8
1,385,686	+				+2.8