Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS05625

Experiment: R2A with D-Cycloserine 0.5 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with D-Cycloserine 0.5 mg/ml
1,236,740	+				+0.1
1,236,740	+				+0.5
1,236,740	+				+0.5
1,236,741	-				+1.1
1,236,753	+				+0.2
1,236,902	+		RR42_RS05620	0.18	-0.7
1,236,902	+		RR42_RS05620	0.18	-0.9
1,237,323	-		RR42_RS05620	0.73	+1.0
1,237,711	-				-2.2
1,237,711	-				+0.7
1,237,776	+				+0.2
1,237,777	-				-0.1
1,237,831	-				+0.3
1,238,023	+		RR42_RS05625	0.21	-1.4
1,238,024	-		RR42_RS05625	0.21	-1.8
1,238,079	+		RR42_RS05625	0.25	+0.1
1,238,079	+		RR42_RS05625	0.25	+0.1
1,238,079	+		RR42_RS05625	0.25	+0.3
1,238,144	-		RR42_RS05625	0.29	+0.5
1,238,391	+		RR42_RS05625	0.46	-0.9
1,238,539	+		RR42_RS05625	0.56	+0.1
1,238,539	+		RR42_RS05625	0.56	+0.5
1,238,539	+		RR42_RS05625	0.56	+0.3
1,238,539	+		RR42_RS05625	0.56	-0.2
1,238,540	-		RR42_RS05625	0.56	+0.1
1,238,540	-		RR42_RS05625	0.56	+1.7
1,238,540	-		RR42_RS05625	0.56	-1.5
1,238,540	-		RR42_RS05625	0.56	+0.7
1,238,540	-		RR42_RS05625	0.56	-0.7
1,238,540	-		RR42_RS05625	0.56	+0.5
1,238,541	+		RR42_RS05625	0.56	-2.5
1,238,588	+		RR42_RS05625	0.59	-2.2
1,238,856	+		RR42_RS05625	0.77	+0.5
1,238,890	+		RR42_RS05625	0.79	-0.1
1,238,932	-		RR42_RS05625	0.82	-0.6
1,238,959	-		RR42_RS05625	0.84	-0.3
1,238,998	+		RR42_RS05625	0.87	-0.0
1,238,999	-		RR42_RS05625	0.87	-0.5
1,238,999	-		RR42_RS05625	0.87	-0.3
1,239,000	+		RR42_RS05625	0.87	-1.0
1,239,219	+				-0.2
1,239,275	+				-0.9
1,239,387	+				+1.0
1,239,450	+				+0.3
1,239,451	-				+0.3
1,239,451	-				+1.3
1,239,452	+				+0.2
1,239,452	+				-0.5
1,239,452	+				-1.6
1,239,477	+				-1.0
1,239,477	+				-0.2
1,239,478	-				-0.2
1,239,478	-				+0.7
1,239,845	-		RR42_RS05630	0.24	-2.0
1,239,933	-		RR42_RS05630	0.31	-3.1
1,239,945	-		RR42_RS05630	0.32	+0.9
1,239,977	+		RR42_RS05630	0.34	-0.3
1,240,079	+		RR42_RS05630	0.42	-1.2
1,240,079	+		RR42_RS05630	0.42	-1.6
1,240,080	-		RR42_RS05630	0.42	-0.0