Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS05255

Experiment: R2A with D-Cycloserine 0.5 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with D-Cycloserine 0.5 mg/ml
1,158,914	+		RR42_RS05245	0.83	-1.3
1,158,947	+		RR42_RS05245	0.86	+0.5
1,158,947	+		RR42_RS05245	0.86	+0.1
1,158,947	+		RR42_RS05245	0.86	+0.4
1,159,008	-				-1.8
1,159,096	-				+0.1
1,159,141	+				+0.4
1,159,163	-				-2.1
1,159,165	+				-1.0
1,159,165	+				-1.0
1,159,299	+				+1.0
1,159,321	+				+0.2
1,159,390	+				+0.8
1,159,390	+				+0.2
1,159,391	-				+1.9
1,159,391	-				+0.8
1,159,391	-				+0.9
1,159,391	-				+0.2
1,159,391	-				-0.3
1,159,554	-		RR42_RS05250	0.34	+0.7
1,159,820	+		RR42_RS05250	0.85	-0.2
1,159,820	+		RR42_RS05250	0.85	+1.8
1,159,820	+		RR42_RS05250	0.85	+0.8
1,159,821	-		RR42_RS05250	0.85	-0.6
1,159,821	-		RR42_RS05250	0.85	-0.9
1,159,821	-		RR42_RS05250	0.85	-1.1
1,159,821	-		RR42_RS05250	0.85	+0.5
1,159,821	-		RR42_RS05250	0.85	+0.1
1,159,821	-		RR42_RS05250	0.85	-0.4
1,159,821	-		RR42_RS05250	0.85	+0.0
1,159,883	+				+2.6
1,159,883	+				+0.2
1,159,884	-				-0.2
1,160,116	+		RR42_RS05255	0.22	-0.6
1,160,117	-		RR42_RS05255	0.22	-0.7
1,160,214	-		RR42_RS05255	0.32	+0.0
1,160,214	-		RR42_RS05255	0.32	+0.4
1,160,214	-		RR42_RS05255	0.32	-1.8
1,160,216	-		RR42_RS05255	0.33	-2.1
1,160,291	-		RR42_RS05255	0.41	-1.4
1,160,294	-		RR42_RS05255	0.41	-0.4
1,160,306	-		RR42_RS05255	0.42	+2.0
1,160,306	-		RR42_RS05255	0.42	-0.2
1,160,306	-		RR42_RS05255	0.42	-1.0
1,160,459	-		RR42_RS05255	0.58	+0.0
1,160,459	-		RR42_RS05255	0.58	-2.4
1,160,632	+		RR42_RS05255	0.76	-0.2
1,160,633	-		RR42_RS05255	0.77	+0.0
1,160,750	-		RR42_RS05255	0.89	-1.3
1,160,750	-		RR42_RS05255	0.89	-0.2
1,160,839	+				-1.3
1,160,905	+				-0.2
1,160,906	-				+0.1
1,160,906	-				-1.3
1,161,053	-		RR42_RS05260	0.11	+0.4
1,161,053	-		RR42_RS05260	0.11	-0.2
1,161,358	+		RR42_RS05260	0.32	-2.0
1,161,359	-		RR42_RS05260	0.32	+1.0
1,161,694	+		RR42_RS05260	0.56	+1.5
1,161,695	-		RR42_RS05260	0.56	-1.5
1,161,760	+		RR42_RS05260	0.61	+2.4