Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS05005

Experiment: R2A with D-Cycloserine 0.5 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with D-Cycloserine 0.5 mg/ml
1,104,829	+		RR42_RS05000	0.59	-3.8
1,104,830	-		RR42_RS05000	0.59	-1.8
1,104,868	+		RR42_RS05000	0.62	+0.9
1,104,868	+		RR42_RS05000	0.62	-0.5
1,104,869	-		RR42_RS05000	0.62	+0.7
1,104,952	+		RR42_RS05000	0.67	+0.1
1,104,953	-		RR42_RS05000	0.67	+0.7
1,105,090	+		RR42_RS05000	0.75	-2.0
1,105,090	+		RR42_RS05000	0.75	+0.7
1,105,091	-		RR42_RS05000	0.75	+0.5
1,105,091	-		RR42_RS05000	0.75	-2.8
1,105,168	+		RR42_RS05000	0.80	-1.9
1,105,168	+		RR42_RS05000	0.80	-2.1
1,105,169	-		RR42_RS05000	0.80	+0.0
1,105,169	-		RR42_RS05000	0.80	-1.3
1,105,216	+		RR42_RS05000	0.83	-0.1
1,105,217	-		RR42_RS05000	0.83	-0.1
1,105,351	+				-0.0
1,105,352	-				-0.5
1,105,352	-				-1.3
1,105,352	-				+0.6
1,105,352	-				+0.4
1,105,352	-				-2.8
1,105,352	-				+0.1
1,105,417	+				+1.1
1,105,417	+				-0.3
1,105,417	+				-0.4
1,105,418	-				-1.6
1,105,510	+				-0.2
1,105,510	+				-0.3
1,105,510	+				+0.0
1,106,158	+		RR42_RS05005	0.51	-0.6
1,106,159	-		RR42_RS05005	0.51	-0.3
1,106,159	-		RR42_RS05005	0.51	+0.1
1,106,373	+		RR42_RS05005	0.68	-1.6
1,106,374	-		RR42_RS05005	0.68	-0.3
1,106,374	-		RR42_RS05005	0.68	-0.9
1,106,568	-		RR42_RS05005	0.83	-1.8
1,106,667	-				-1.9
1,106,850	-				+0.8
1,106,850	-				+2.1
1,106,850	-				+0.4
1,106,850	-				-0.7
1,106,851	+				-0.3
1,106,851	+				-0.1
1,106,851	+				+0.2
1,106,852	-				-1.0
1,106,852	-				+0.4
1,106,852	-				+0.5
1,106,852	-				-1.9
1,106,852	-				-2.3
1,106,853	+				-1.1
1,106,853	+				+2.1
1,106,853	+				-2.3
1,106,854	-				-0.2
1,106,854	-				-0.6
1,106,871	+				-0.5
1,106,872	-				+1.5
1,106,872	-				-1.0
1,106,872	-				-1.0
1,106,872	-				+0.9
1,106,874	+				-2.8
1,107,000	+		RR42_RS05010	0.19	-0.1
1,107,000	+		RR42_RS05010	0.19	-0.3
1,107,000	+		RR42_RS05010	0.19	-1.1
1,107,000	+		RR42_RS05010	0.19	+0.5
1,107,001	-		RR42_RS05010	0.19	-0.4
1,107,001	-		RR42_RS05010	0.19	+0.6
1,107,104	+		RR42_RS05010	0.45	-0.6
1,107,227	+		RR42_RS05010	0.76	+0.8
1,107,227	+		RR42_RS05010	0.76	-0.2
1,107,227	+		RR42_RS05010	0.76	-0.3
1,107,228	-		RR42_RS05010	0.77	-0.4
1,107,228	-		RR42_RS05010	0.77	-1.1
1,107,302	+				-0.9
1,107,348	+				+0.3
1,107,349	-				+1.1
1,107,467	+		RR42_RS05015	0.14	-2.1
1,107,468	-		RR42_RS05015	0.14	-0.7
1,107,657	+		RR42_RS05015	0.47	-0.8
1,107,672	+		RR42_RS05015	0.50	-1.0
1,107,672	+		RR42_RS05015	0.50	-4.1
1,107,745	-		RR42_RS05015	0.63	-0.8
1,107,745	-		RR42_RS05015	0.63	+0.4