Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS04895

Experiment: R2A with D-Cycloserine 0.5 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with D-Cycloserine 0.5 mg/ml
1,084,704	-				+0.2
1,084,895	+		RR42_RS04890	0.26	+1.0
1,084,896	-		RR42_RS04890	0.27	-0.5
1,085,238	-		RR42_RS04890	0.74	-0.7
1,085,366	+				+0.0
1,085,366	+				-0.4
1,085,367	-				-0.1
1,085,385	+				+1.0
1,085,385	+				+0.4
1,085,906	+		RR42_RS04895	0.37	-3.4
1,085,907	-		RR42_RS04895	0.37	-2.3
1,085,907	-		RR42_RS04895	0.37	-0.3
1,085,907	-		RR42_RS04895	0.37	-1.6
1,085,988	+		RR42_RS04895	0.46	-1.7
1,085,988	+		RR42_RS04895	0.46	+1.0
1,085,988	+		RR42_RS04895	0.46	+0.0
1,085,988	+		RR42_RS04895	0.46	-2.2
1,085,988	+		RR42_RS04895	0.46	-1.0
1,085,988	+		RR42_RS04895	0.46	+0.9
1,085,988	+		RR42_RS04895	0.46	-1.2
1,085,989	-		RR42_RS04895	0.46	-1.9
1,085,989	-		RR42_RS04895	0.46	-3.0
1,085,989	-		RR42_RS04895	0.46	-1.4
1,085,989	-		RR42_RS04895	0.46	-2.6
1,085,989	-		RR42_RS04895	0.46	+1.0
1,086,094	+		RR42_RS04895	0.58	+0.9
1,086,104	+		RR42_RS04895	0.59	-1.3
1,086,105	-		RR42_RS04895	0.59	+0.2
1,086,105	-		RR42_RS04895	0.59	-1.6
1,086,111	+		RR42_RS04895	0.60	-2.3
1,086,111	+		RR42_RS04895	0.60	-1.3
1,086,111	+		RR42_RS04895	0.60	-1.4
1,086,111	+		RR42_RS04895	0.60	-2.7
1,086,181	+		RR42_RS04895	0.67	-0.3
1,086,181	+		RR42_RS04895	0.67	-0.5
1,086,217	-		RR42_RS04895	0.71	-0.1
1,086,411	+				-3.8
1,086,411	+				-0.9
1,086,411	+				-2.3
1,086,412	-				-0.8
1,086,412	-				-1.9
1,086,412	-				+0.2
1,086,462	+				-1.8
1,086,463	-				+0.2
1,086,487	+				-1.6
1,086,488	+				-2.0
1,086,488	-				-1.0
1,086,488	-				+1.0
1,086,576	+				-1.3
1,086,576	+				+0.1
1,086,576	+				+0.6
1,086,576	+				-0.2
1,086,576	+				-0.3
1,086,576	+				+0.5
1,086,577	-				-1.8
1,086,577	-				+0.4
1,086,577	-				-0.3
1,086,577	-				+0.2
1,086,577	-				+1.1
1,086,577	-				-0.0
1,086,577	-				-0.6
1,086,577	-				-1.3
1,086,584	-				+0.1
1,086,589	+				+0.0
1,086,788	+		RR42_RS04900	0.13	+0.5
1,086,898	+		RR42_RS04900	0.24	+1.0
1,086,898	+		RR42_RS04900	0.24	+0.9
1,086,899	-		RR42_RS04900	0.24	+0.0
1,086,899	-		RR42_RS04900	0.24	-1.7
1,086,899	-		RR42_RS04900	0.24	+0.5
1,086,899	-		RR42_RS04900	0.24	-0.3
1,086,900	+		RR42_RS04900	0.24	+0.7
1,086,900	+		RR42_RS04900	0.24	+0.6
1,086,901	-		RR42_RS04900	0.24	-0.4
1,086,993	+		RR42_RS04900	0.33	-2.3
1,086,994	-		RR42_RS04900	0.33	-0.8
1,087,014	+		RR42_RS04900	0.35	-0.7
1,087,014	+		RR42_RS04900	0.35	+0.2
1,087,015	-		RR42_RS04900	0.35	-0.7
1,087,015	-		RR42_RS04900	0.35	+0.8
1,087,015	-		RR42_RS04900	0.35	-2.0
1,087,054	-		RR42_RS04900	0.38	-0.7
1,087,083	+		RR42_RS04900	0.41	-0.1
1,087,083	+		RR42_RS04900	0.41	-0.2
1,087,083	+		RR42_RS04900	0.41	-0.5
1,087,083	+		RR42_RS04900	0.41	-0.1
1,087,084	-		RR42_RS04900	0.41	+0.7
1,087,173	+		RR42_RS04900	0.50	-0.2
1,087,173	+		RR42_RS04900	0.50	+0.3
1,087,173	+		RR42_RS04900	0.50	+3.2
1,087,173	+		RR42_RS04900	0.50	-1.1
1,087,173	+		RR42_RS04900	0.50	-1.1
1,087,174	-		RR42_RS04900	0.50	-1.0
1,087,174	-		RR42_RS04900	0.50	+3.0
1,087,174	-		RR42_RS04900	0.50	-1.3
1,087,174	-		RR42_RS04900	0.50	+0.8
1,087,174	-		RR42_RS04900	0.50	-1.5
1,087,216	+		RR42_RS04900	0.54	+0.5
1,087,217	-		RR42_RS04900	0.54	+0.7
1,087,344	+		RR42_RS04900	0.66	+1.2
1,087,344	+		RR42_RS04900	0.66	+0.1
1,087,345	-		RR42_RS04900	0.66	-2.3
1,087,345	-		RR42_RS04900	0.66	+0.1
1,087,359	+		RR42_RS04900	0.67	-2.1
1,087,359	+		RR42_RS04900	0.67	+0.8
1,087,359	+		RR42_RS04900	0.67	-0.2
1,087,360	-		RR42_RS04900	0.67	-3.8
1,087,360	-		RR42_RS04900	0.67	+0.4
1,087,360	-		RR42_RS04900	0.67	-0.9
1,087,360	-		RR42_RS04900	0.67	-0.9
1,087,450	-		RR42_RS04900	0.76	-0.6