Experiment: R2A with D-Cycloserine 0.5 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt
RR42_RS04190: RR42_RS04190 - hypothetical protein, at 926,604 to 927,563
_RS04190
Position (kb) 926
927
928 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 925.621 kb on + strand at 925.621 kb on + strand at 925.622 kb on - strand at 925.622 kb on - strand at 925.622 kb on - strand at 925.669 kb on + strand at 925.669 kb on + strand at 925.669 kb on + strand at 925.670 kb on - strand at 925.670 kb on - strand at 925.670 kb on - strand at 925.734 kb on + strand at 925.734 kb on + strand at 925.734 kb on + strand at 925.734 kb on + strand at 925.734 kb on + strand at 925.734 kb on + strand at 925.734 kb on + strand at 925.735 kb on - strand at 925.735 kb on - strand at 925.829 kb on - strand at 925.855 kb on + strand at 925.856 kb on - strand at 925.856 kb on - strand at 926.001 kb on + strand at 926.001 kb on + strand at 926.001 kb on + strand at 926.001 kb on + strand at 926.002 kb on - strand at 926.193 kb on + strand at 926.193 kb on + strand at 926.194 kb on - strand at 926.240 kb on + strand at 926.255 kb on + strand at 926.275 kb on - strand at 926.275 kb on - strand at 926.277 kb on - strand at 926.326 kb on + strand at 926.327 kb on - strand at 926.327 kb on - strand at 926.327 kb on - strand at 926.327 kb on - strand at 926.348 kb on + strand at 926.348 kb on + strand at 926.348 kb on + strand at 926.349 kb on - strand at 926.349 kb on - strand at 926.349 kb on - strand at 926.349 kb on - strand at 926.352 kb on + strand at 926.352 kb on + strand at 926.352 kb on + strand at 926.352 kb on + strand at 926.352 kb on + strand at 926.352 kb on + strand at 926.353 kb on - strand at 926.353 kb on - strand at 926.353 kb on - strand at 926.353 kb on - strand at 926.463 kb on + strand at 926.463 kb on + strand at 926.464 kb on - strand at 926.478 kb on + strand at 926.479 kb on - strand at 926.479 kb on - strand at 926.497 kb on - strand at 926.523 kb on + strand at 926.528 kb on + strand at 926.529 kb on - strand at 926.542 kb on + strand at 926.542 kb on + strand at 926.832 kb on + strand, within RR42_RS04190 at 926.876 kb on - strand, within RR42_RS04190 at 926.888 kb on + strand, within RR42_RS04190 at 926.889 kb on - strand, within RR42_RS04190 at 926.908 kb on - strand, within RR42_RS04190 at 926.908 kb on - strand, within RR42_RS04190 at 926.908 kb on - strand, within RR42_RS04190 at 926.994 kb on + strand, within RR42_RS04190 at 926.995 kb on - strand, within RR42_RS04190 at 927.045 kb on + strand, within RR42_RS04190 at 927.195 kb on + strand, within RR42_RS04190 at 927.195 kb on + strand, within RR42_RS04190 at 927.195 kb on + strand, within RR42_RS04190 at 927.196 kb on - strand, within RR42_RS04190 at 927.196 kb on - strand, within RR42_RS04190 at 927.253 kb on + strand, within RR42_RS04190 at 927.253 kb on + strand, within RR42_RS04190 at 927.253 kb on + strand, within RR42_RS04190 at 927.253 kb on + strand, within RR42_RS04190 at 927.253 kb on + strand, within RR42_RS04190 at 927.253 kb on + strand, within RR42_RS04190 at 927.253 kb on + strand, within RR42_RS04190 at 927.253 kb on + strand, within RR42_RS04190 at 927.253 kb on + strand, within RR42_RS04190 at 927.254 kb on - strand, within RR42_RS04190 at 927.254 kb on - strand, within RR42_RS04190 at 927.256 kb on + strand, within RR42_RS04190 at 927.256 kb on + strand, within RR42_RS04190 at 927.256 kb on + strand, within RR42_RS04190 at 927.257 kb on - strand, within RR42_RS04190 at 927.257 kb on - strand, within RR42_RS04190 at 927.257 kb on - strand, within RR42_RS04190 at 927.257 kb on - strand, within RR42_RS04190 at 927.296 kb on - strand, within RR42_RS04190 at 927.296 kb on - strand, within RR42_RS04190 at 927.296 kb on - strand, within RR42_RS04190 at 927.321 kb on + strand, within RR42_RS04190 at 927.321 kb on + strand, within RR42_RS04190 at 927.441 kb on + strand, within RR42_RS04190 at 927.441 kb on + strand, within RR42_RS04190 at 927.441 kb on + strand, within RR42_RS04190 at 927.442 kb on - strand, within RR42_RS04190 at 927.442 kb on - strand, within RR42_RS04190 at 927.442 kb on - strand, within RR42_RS04190 at 927.502 kb on + strand at 927.502 kb on + strand at 927.502 kb on + strand at 927.502 kb on + strand at 927.502 kb on + strand at 927.583 kb on - strand at 927.651 kb on - strand at 927.680 kb on + strand at 927.793 kb on - strand at 927.854 kb on + strand at 927.854 kb on + strand at 927.854 kb on + strand at 927.854 kb on + strand at 927.855 kb on - strand at 927.855 kb on - strand at 927.855 kb on - strand at 927.934 kb on - strand at 927.975 kb on - strand at 928.128 kb on - strand at 928.128 kb on - strand at 928.130 kb on + strand at 928.130 kb on + strand at 928.130 kb on + strand at 928.131 kb on - strand at 928.131 kb on - strand at 928.131 kb on - strand at 928.131 kb on - strand at 928.131 kb on - strand at 928.131 kb on - strand at 928.131 kb on - strand at 928.131 kb on - strand at 928.157 kb on + strand at 928.158 kb on - strand at 928.171 kb on + strand at 928.172 kb on - strand at 928.225 kb on + strand at 928.225 kb on + strand at 928.225 kb on + strand at 928.255 kb on + strand at 928.255 kb on + strand at 928.256 kb on - strand at 928.256 kb on - strand at 928.256 kb on - strand at 928.293 kb on + strand at 928.294 kb on - strand at 928.334 kb on - strand at 928.341 kb on + strand at 928.342 kb on - strand at 928.432 kb on - strand at 928.457 kb on + strand at 928.457 kb on + strand at 928.457 kb on + strand at 928.457 kb on + strand at 928.457 kb on + strand at 928.458 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with D-Cycloserine 0.5 mg/ml remove 925,621 + -2.7 925,621 + +0.4 925,622 - -2.6 925,622 - -0.5 925,622 - -0.2 925,669 + +0.3 925,669 + -0.1 925,669 + -0.1 925,670 - +1.2 925,670 - -2.3 925,670 - -0.5 925,734 + +1.1 925,734 + +0.5 925,734 + +0.8 925,734 + +0.8 925,734 + -2.0 925,734 + +1.0 925,734 + -0.1 925,735 - +0.1 925,735 - +0.1 925,829 - -0.5 925,855 + +1.0 925,856 - +1.3 925,856 - +0.2 926,001 + -1.1 926,001 + -0.4 926,001 + -0.8 926,001 + +1.7 926,002 - +0.8 926,193 + -1.1 926,193 + -0.1 926,194 - -0.3 926,240 + -0.4 926,255 + -0.4 926,275 - -0.6 926,275 - +0.7 926,277 - +0.9 926,326 + +0.7 926,327 - +0.8 926,327 - -1.5 926,327 - +0.4 926,327 - -1.0 926,348 + +0.3 926,348 + +1.2 926,348 + -0.8 926,349 - -0.9 926,349 - -2.4 926,349 - -0.4 926,349 - -1.2 926,352 + +0.5 926,352 + +0.0 926,352 + -2.6 926,352 + +1.8 926,352 + -1.8 926,352 + +0.5 926,353 - +1.3 926,353 - -0.1 926,353 - +1.1 926,353 - -0.7 926,463 + +0.4 926,463 + -0.9 926,464 - +0.7 926,478 + +0.9 926,479 - +1.8 926,479 - -0.5 926,497 - -0.9 926,523 + -1.2 926,528 + +0.2 926,529 - +0.2 926,542 + +0.6 926,542 + +0.3 926,832 + RR42_RS04190 0.24 -0.6 926,876 - RR42_RS04190 0.28 -0.2 926,888 + RR42_RS04190 0.30 +0.9 926,889 - RR42_RS04190 0.30 -1.5 926,908 - RR42_RS04190 0.32 +0.2 926,908 - RR42_RS04190 0.32 -0.1 926,908 - RR42_RS04190 0.32 +0.3 926,994 + RR42_RS04190 0.41 -0.3 926,995 - RR42_RS04190 0.41 +2.2 927,045 + RR42_RS04190 0.46 -0.6 927,195 + RR42_RS04190 0.62 +2.1 927,195 + RR42_RS04190 0.62 +1.1 927,195 + RR42_RS04190 0.62 +0.1 927,196 - RR42_RS04190 0.62 -0.5 927,196 - RR42_RS04190 0.62 -0.4 927,253 + RR42_RS04190 0.68 -1.3 927,253 + RR42_RS04190 0.68 +0.8 927,253 + RR42_RS04190 0.68 -3.7 927,253 + RR42_RS04190 0.68 -1.0 927,253 + RR42_RS04190 0.68 +0.4 927,253 + RR42_RS04190 0.68 -0.3 927,253 + RR42_RS04190 0.68 +0.5 927,253 + RR42_RS04190 0.68 -0.0 927,253 + RR42_RS04190 0.68 +1.5 927,254 - RR42_RS04190 0.68 -0.8 927,254 - RR42_RS04190 0.68 +0.3 927,256 + RR42_RS04190 0.68 -1.1 927,256 + RR42_RS04190 0.68 +0.6 927,256 + RR42_RS04190 0.68 -0.3 927,257 - RR42_RS04190 0.68 +2.1 927,257 - RR42_RS04190 0.68 +0.9 927,257 - RR42_RS04190 0.68 -0.4 927,257 - RR42_RS04190 0.68 -0.8 927,296 - RR42_RS04190 0.72 +0.4 927,296 - RR42_RS04190 0.72 -0.5 927,296 - RR42_RS04190 0.72 -0.5 927,321 + RR42_RS04190 0.75 -3.9 927,321 + RR42_RS04190 0.75 -0.3 927,441 + RR42_RS04190 0.87 +0.1 927,441 + RR42_RS04190 0.87 +1.0 927,441 + RR42_RS04190 0.87 -1.6 927,442 - RR42_RS04190 0.87 -0.4 927,442 - RR42_RS04190 0.87 -2.9 927,442 - RR42_RS04190 0.87 -1.7 927,502 + -0.2 927,502 + +0.2 927,502 + -0.9 927,502 + -0.9 927,502 + -0.3 927,583 - -0.4 927,651 - +0.8 927,680 + -0.4 927,793 - -1.6 927,854 + +0.1 927,854 + +0.3 927,854 + +0.9 927,854 + -0.3 927,855 - +0.1 927,855 - +0.2 927,855 - -0.9 927,934 - +1.1 927,975 - -0.7 928,128 - +1.3 928,128 - -0.3 928,130 + +0.2 928,130 + -0.2 928,130 + -2.8 928,131 - -3.8 928,131 - +1.2 928,131 - +1.8 928,131 - -1.0 928,131 - +0.5 928,131 - +0.5 928,131 - +0.8 928,131 - -0.9 928,157 + +1.3 928,158 - +1.1 928,171 + +0.5 928,172 - +0.1 928,225 + +0.5 928,225 + -0.5 928,225 + -0.1 928,255 + +2.3 928,255 + -0.5 928,256 - -1.2 928,256 - -1.7 928,256 - +0.7 928,293 + -1.2 928,294 - +0.7 928,334 - -0.6 928,341 + +1.5 928,342 - -1.7 928,432 - -0.2 928,457 + +0.7 928,457 + -0.2 928,457 + -0.1 928,457 + -0.3 928,457 + +0.0 928,458 - +0.4
Or see this region's nucleotide sequence