Experiment: R2A with D-Cycloserine 0.5 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS03985 and RR42_RS03990 are separated by 274 nucleotides RR42_RS03990 and RR42_RS03995 are separated by 577 nucleotides
RR42_RS03985: RR42_RS03985 - histidine kinase, at 879,280 to 881,196
_RS03985
RR42_RS03990: RR42_RS03990 - aspartate:proton symporter Glt <small>(from data)</small>, at 881,471 to 882,781
_RS03990
RR42_RS03995: RR42_RS03995 - diguanylate cyclase, at 883,359 to 886,721
_RS03995
Position (kb) 881
882
883 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 880.649 kb on + strand, within RR42_RS03985 at 880.649 kb on + strand, within RR42_RS03985 at 880.650 kb on - strand, within RR42_RS03985 at 880.650 kb on - strand, within RR42_RS03985 at 880.650 kb on - strand, within RR42_RS03985 at 880.653 kb on - strand, within RR42_RS03985 at 880.685 kb on + strand, within RR42_RS03985 at 880.686 kb on - strand, within RR42_RS03985 at 880.686 kb on - strand, within RR42_RS03985 at 880.754 kb on + strand, within RR42_RS03985 at 880.754 kb on + strand, within RR42_RS03985 at 880.754 kb on + strand, within RR42_RS03985 at 880.754 kb on + strand, within RR42_RS03985 at 880.754 kb on + strand, within RR42_RS03985 at 880.755 kb on - strand, within RR42_RS03985 at 880.856 kb on + strand, within RR42_RS03985 at 880.857 kb on - strand, within RR42_RS03985 at 880.857 kb on - strand, within RR42_RS03985 at 880.946 kb on + strand, within RR42_RS03985 at 880.947 kb on - strand, within RR42_RS03985 at 880.952 kb on + strand, within RR42_RS03985 at 880.986 kb on - strand, within RR42_RS03985 at 880.986 kb on - strand, within RR42_RS03985 at 881.039 kb on + strand at 881.040 kb on - strand at 881.040 kb on - strand at 881.040 kb on - strand at 881.272 kb on - strand at 881.272 kb on - strand at 881.296 kb on + strand at 881.296 kb on + strand at 881.297 kb on - strand at 881.297 kb on - strand at 881.297 kb on - strand at 881.298 kb on + strand at 881.325 kb on + strand at 881.326 kb on - strand at 881.388 kb on - strand at 881.389 kb on - strand at 881.473 kb on - strand at 881.473 kb on - strand at 881.473 kb on - strand at 881.847 kb on + strand, within RR42_RS03990 at 881.847 kb on + strand, within RR42_RS03990 at 881.847 kb on + strand, within RR42_RS03990 at 881.848 kb on - strand, within RR42_RS03990 at 881.848 kb on - strand, within RR42_RS03990 at 881.848 kb on - strand, within RR42_RS03990 at 881.848 kb on - strand, within RR42_RS03990 at 881.848 kb on - strand, within RR42_RS03990 at 882.046 kb on - strand, within RR42_RS03990 at 882.090 kb on + strand, within RR42_RS03990 at 882.198 kb on + strand, within RR42_RS03990 at 882.198 kb on + strand, within RR42_RS03990 at 882.198 kb on + strand, within RR42_RS03990 at 882.198 kb on + strand, within RR42_RS03990 at 882.199 kb on - strand, within RR42_RS03990 at 883.086 kb on + strand at 883.086 kb on + strand at 883.110 kb on - strand at 883.432 kb on + strand at 883.432 kb on + strand at 883.432 kb on + strand at 883.433 kb on - strand at 883.433 kb on - strand at 883.433 kb on - strand at 883.444 kb on + strand at 883.445 kb on - strand at 883.612 kb on + strand at 883.612 kb on + strand at 883.613 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with D-Cycloserine 0.5 mg/ml remove 880,649 + RR42_RS03985 0.71 -0.2 880,649 + RR42_RS03985 0.71 +1.7 880,650 - RR42_RS03985 0.71 -0.4 880,650 - RR42_RS03985 0.71 +0.7 880,650 - RR42_RS03985 0.71 +0.5 880,653 - RR42_RS03985 0.72 -0.7 880,685 + RR42_RS03985 0.73 +0.1 880,686 - RR42_RS03985 0.73 +0.9 880,686 - RR42_RS03985 0.73 -0.8 880,754 + RR42_RS03985 0.77 +0.5 880,754 + RR42_RS03985 0.77 -0.9 880,754 + RR42_RS03985 0.77 +0.5 880,754 + RR42_RS03985 0.77 -2.1 880,754 + RR42_RS03985 0.77 -1.1 880,755 - RR42_RS03985 0.77 +0.1 880,856 + RR42_RS03985 0.82 -2.6 880,857 - RR42_RS03985 0.82 -0.9 880,857 - RR42_RS03985 0.82 +2.9 880,946 + RR42_RS03985 0.87 +0.2 880,947 - RR42_RS03985 0.87 -0.9 880,952 + RR42_RS03985 0.87 -1.2 880,986 - RR42_RS03985 0.89 -1.5 880,986 - RR42_RS03985 0.89 -2.8 881,039 + -2.3 881,040 - +0.5 881,040 - -0.5 881,040 - -1.1 881,272 - +0.5 881,272 - +1.1 881,296 + -0.5 881,296 + -2.6 881,297 - +0.4 881,297 - -0.5 881,297 - +1.0 881,298 + -0.8 881,325 + +0.5 881,326 - -0.3 881,388 - -0.7 881,389 - +0.3 881,473 - -4.0 881,473 - +0.0 881,473 - -0.9 881,847 + RR42_RS03990 0.29 -1.6 881,847 + RR42_RS03990 0.29 -0.8 881,847 + RR42_RS03990 0.29 +1.1 881,848 - RR42_RS03990 0.29 +0.3 881,848 - RR42_RS03990 0.29 -0.6 881,848 - RR42_RS03990 0.29 +0.3 881,848 - RR42_RS03990 0.29 -0.0 881,848 - RR42_RS03990 0.29 -0.0 882,046 - RR42_RS03990 0.44 -1.9 882,090 + RR42_RS03990 0.47 -0.7 882,198 + RR42_RS03990 0.55 +0.2 882,198 + RR42_RS03990 0.55 -1.5 882,198 + RR42_RS03990 0.55 +0.5 882,198 + RR42_RS03990 0.55 -0.9 882,199 - RR42_RS03990 0.56 +1.1 883,086 + +0.1 883,086 + -2.6 883,110 - -1.1 883,432 + +0.3 883,432 + -0.4 883,432 + -0.4 883,433 - -1.5 883,433 - -0.3 883,433 - +0.2 883,444 + +1.4 883,445 - +1.7 883,612 + +1.0 883,612 + +0.1 883,613 - -0.7
Or see this region's nucleotide sequence